Variant report

Variant	rs11636300
Chromosome Location	chr15:31689684-31689685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31666607..31669484-chr15:31689062..31691079,2	MCF-7	breast:
2	chr15:31619402..31621251-chr15:31688977..31690973,2	MCF-7	breast:
3	chr15:31684315..31687013-chr15:31687874..31690870,2	MCF-7	breast:
4	chr15:31689400..31690173-chr17:56756798..56757540,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000169926	Chromatin interaction
ENSG00000200997	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10083664	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10083682	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10459614	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10851544	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10851545	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11630067	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11630485	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11631345	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11634484	0.88[ASN][1000 genomes]
rs11638964	0.90[ASN][1000 genomes]
rs11639133	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12441543	0.98[ASN][1000 genomes]
rs12441765	0.92[ASN][1000 genomes]
rs12594811	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12899540	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12902234	0.86[ASN][1000 genomes]
rs12910502	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12912800	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34482222	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4346167	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4558376	0.92[ASN][1000 genomes]
rs4606678	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4613031	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4779523	0.84[ASN][1000 genomes]
rs4779525	0.97[ASN][1000 genomes]
rs4779526	0.92[ASN][1000 genomes]
rs59970767	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6493652	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7165900	0.91[ASN][1000 genomes]
rs7170922	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7171667	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7174902	0.91[ASN][1000 genomes]
rs7402977	0.88[ASN][1000 genomes]
rs7403010	0.88[ASN][1000 genomes]
rs7496920	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8027155	0.82[ASN][1000 genomes]
rs8030771	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8035633	0.92[ASN][1000 genomes]
rs8042404	0.86[ASN][1000 genomes]
rs8043195	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9744263	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
13	nsv903843	chr15:31672947-31723279	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31685400-31689800	Weak transcription	Small Intestine	intestine
2	chr15:31685400-31690200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:31685800-31694000	Weak transcription	Aorta	Aorta
4	chr15:31686000-31689800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr15:31686000-31690000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:31686000-31690200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:31686000-31696200	Weak transcription	Gastric	stomach
8	chr15:31686200-31689800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:31686200-31690000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:31686200-31690000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:31686200-31690200	Weak transcription	Thymus	Thymus
12	chr15:31686400-31690200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:31686400-31690400	Weak transcription	Dnd41	blood
14	chr15:31688000-31691400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:31688000-31692600	Enhancers	Placenta	Placenta
16	chr15:31688400-31690000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr15:31688600-31690000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:31688600-31690600	Enhancers	HUVEC	blood vessel
19	chr15:31688800-31690000	Enhancers	Liver	Liver
20	chr15:31688800-31690600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr15:31688800-31691000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr15:31688800-31691200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr15:31688800-31691400	Enhancers	Fetal Heart	heart
24	chr15:31688800-31692200	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr15:31688800-31692600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:31688800-31692800	Enhancers	HMEC	breast
27	chr15:31688800-31693200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:31688800-31693400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:31688800-31693400	Enhancers	NHDF-Ad	bronchial
30	chr15:31688800-31695200	Enhancers	Osteobl	bone
31	chr15:31689000-31690400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr15:31689000-31690800	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr15:31689000-31691400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:31689000-31691400	Enhancers	Fetal Intestine Large	intestine
35	chr15:31689000-31691400	Enhancers	Fetal Intestine Small	intestine
36	chr15:31689000-31691800	Enhancers	Lung	lung
37	chr15:31689000-31692000	Enhancers	Stomach Mucosa	stomach
38	chr15:31689000-31692200	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr15:31689000-31693400	Enhancers	NHLF	lung
40	chr15:31689200-31689800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:31689200-31689800	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr15:31689200-31689800	Enhancers	Ovary	ovary
43	chr15:31689200-31689800	Active TSS	HepG2	liver
44	chr15:31689200-31690000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:31689200-31690200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr15:31689200-31691200	Enhancers	Fetal Muscle Trunk	muscle
47	chr15:31689200-31691400	Enhancers	Fetal Muscle Leg	muscle
48	chr15:31689200-31692000	Enhancers	Left Ventricle	heart
49	chr15:31689200-31692400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:31689400-31689800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links