Variant report

Variant	rs4793883
Chromosome Location	chr17:46589560-46589561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46578035..46580947-chr17:46589126..46591025,3	K562	blood:
2	chr17:46583694..46585677-chr17:46589290..46592117,3	K562	blood:
3	chr17:46575342..46577434-chr17:46588645..46590527,2	K562	blood:
4	chr17:46583450..46585256-chr17:46588689..46590687,2	MCF-7	breast:
5	chr17:46585053..46590191-chr17:46590759..46593936,5	MCF-7	breast:
6	chr17:46589537..46591935-chr17:46661739..46663956,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12453445	1.00[AMR][1000 genomes]
rs34768319	1.00[AMR][1000 genomes]
rs4793882	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56872371	1.00[AMR][1000 genomes]
rs57199687	0.98[AFR][1000 genomes]
rs58218522	1.00[AMR][1000 genomes]
rs61648156	1.00[AMR][1000 genomes]
rs71377355	1.00[AMR][1000 genomes]
rs71377361	1.00[AMR][1000 genomes]
rs73985849	1.00[AMR][1000 genomes]
rs73985851	1.00[AMR][1000 genomes]
rs73985874	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases
3	nsv908577	chr17:46584900-46704536	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	343 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46583600-46590200	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr17:46583800-46590400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:46583800-46590400	Weak transcription	Colon Smooth Muscle	Colon
4	chr17:46584000-46590200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr17:46584400-46590200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr17:46584400-46590400	Weak transcription	A549	lung
7	chr17:46585000-46590600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr17:46585000-46591600	Weak transcription	HSMM	muscle
9	chr17:46587800-46590400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr17:46587800-46591800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr17:46588400-46590400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr17:46588800-46589600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr17:46589000-46589600	Flanking Active TSS	GM12878-XiMat	blood
14	chr17:46589000-46590200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr17:46589200-46590200	Weak transcription	K562	blood
16	chr17:46589200-46590400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr17:46589200-46590400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr17:46589200-46590400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr17:46589200-46593600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr17:46589400-46590800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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