Variant report

Variant	rs57199687
Chromosome Location	chr17:46587336-46587337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46582522..46585256-chr17:46587191..46589212,2	K562	blood:
2	chr17:46585053..46590191-chr17:46590759..46593936,5	MCF-7	breast:
3	chr17:46586769..46589469-chr17:46592759..46594297,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4793882	1.00[AFR][1000 genomes]
rs4793883	0.98[AFR][1000 genomes]
rs58067327	1.00[AMR][1000 genomes]
rs59555055	1.00[AMR][1000 genomes]
rs59934148	1.00[AMR][1000 genomes]
rs60681913	1.00[AMR][1000 genomes]
rs61185573	1.00[AMR][1000 genomes]
rs61476017	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases
3	nsv908577	chr17:46584900-46704536	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	343 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46574600-46588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr17:46583600-46590200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr17:46583800-46588000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr17:46583800-46588000	Weak transcription	NHLF	lung
5	chr17:46583800-46590400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:46583800-46590400	Weak transcription	Colon Smooth Muscle	Colon
7	chr17:46584000-46587800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr17:46584000-46588000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr17:46584000-46588000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr17:46584000-46588000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr17:46584000-46590200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr17:46584200-46587400	Weak transcription	NH-A	brain
13	chr17:46584200-46587800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr17:46584200-46588000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr17:46584200-46588200	Weak transcription	NHDF-Ad	bronchial
16	chr17:46584400-46587800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr17:46584400-46588000	Weak transcription	HMEC	breast
18	chr17:46584400-46590200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr17:46584400-46590400	Weak transcription	A549	lung
20	chr17:46584600-46588000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr17:46584600-46588800	Weak transcription	K562	blood
22	chr17:46585000-46590600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr17:46585000-46591600	Weak transcription	HSMM	muscle
24	chr17:46585200-46587800	Weak transcription	GM12878-XiMat	blood

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