The 2.0 version of rSNPBase

Variant report

Variant rs59555055
Chromosome Location chr17:46564623-46564624
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:46555000-46566000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
2 chr17:46559200-46566200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr17:46560800-46566000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr17:46560800-46566400 Enhancers HMEC breast
5 chr17:46561200-46566000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr17:46561200-46566200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr17:46561200-46566200 Weak transcription Primary T helper cells fromperipheralblood blood
8 chr17:46561400-46566600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr17:46561400-46569400 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr17:46561400-46569600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr17:46561800-46564800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr17:46561800-46566000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr17:46561800-46567400 Weak transcription Colon Smooth Muscle Colon
14 chr17:46562000-46564800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
15 chr17:46562000-46565000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr17:46562000-46567600 Weak transcription Rectal Smooth Muscle rectum
17 chr17:46562000-46569800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr17:46562200-46565000 Enhancers NH-A brain
19 chr17:46562400-46564800 Enhancers NHLF lung
20 chr17:46562400-46567800 Weak transcription GM12878-XiMat blood
21 chr17:46563200-46564800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
22 chr17:46563600-46569200 Enhancers K562 blood
23 chr17:46563800-46564800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
24 chr17:46563800-46564800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
25 chr17:46563800-46565000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr17:46563800-46565000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr17:46563800-46565600 Weak transcription Primary hematopoietic stem cells blood
28 chr17:46564200-46564800 Flanking Active TSS NHEK skin
29 chr17:46564200-46567600 Weak transcription Adipose Nuclei Adipose
30 chr17:46564400-46565000 Enhancers HSMMtube muscle
31 chr17:46564400-46565000 Enhancers NHDF-Ad bronchial
32 chr17:46564400-46565000 Enhancers Osteobl bone
33 chr17:46564600-46564800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr17:46564600-46565000 Enhancers Muscle Satellite Cultured Cells --
35 chr17:46564600-46565200 Enhancers HSMM muscle
36 chr17:46564600-46565600 Weak transcription Primary hematopoietic stem cells short term culture blood
37 chr17:46564600-46569400 Weak transcription A549 lung
38 chr17:46564600-46569800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr17:46564600-46569800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr17:46564600-46569800 Weak transcription Placenta Amnion Placenta Amnion

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Last update: Aug 31, 2015