Variant report

Variant	rs73985851
Chromosome Location	chr17:46597013-46597014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46590407..46593001-chr17:46595445..46597263,2	MCF-7	breast:
2	chr17:46569196..46571892-chr17:46596978..46599661,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12453445	1.00[AMR][1000 genomes]
rs34768319	1.00[AMR][1000 genomes]
rs4793882	1.00[AMR][1000 genomes]
rs4793883	1.00[AMR][1000 genomes]
rs56872371	1.00[AMR][1000 genomes]
rs58067327	0.97[AFR][1000 genomes]
rs58218522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59555055	0.97[AFR][1000 genomes]
rs59934148	1.00[AFR][1000 genomes]
rs60681913	1.00[AFR][1000 genomes]
rs61185573	1.00[AFR][1000 genomes]
rs61476017	1.00[AFR][1000 genomes]
rs61648156	1.00[AMR][1000 genomes]
rs71377355	1.00[AMR][1000 genomes]
rs71377361	1.00[AMR][1000 genomes]
rs73985849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73985874	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases
3	nsv908577	chr17:46584900-46704536	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	343 gene(s)	inside rSNPs	diseases
4	nsv908578	chr17:46592413-46698710	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	335 gene(s)	inside rSNPs	diseases
5	nsv908579	chr17:46592413-46727289	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46590800-46599600	Weak transcription	Right Atrium	heart
2	chr17:46591200-46599400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr17:46592000-46604000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr17:46592200-46599400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr17:46592400-46599400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr17:46592600-46597800	Weak transcription	HSMM	muscle
7	chr17:46593800-46599400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr17:46594200-46597200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr17:46594200-46599400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:46595200-46599600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr17:46596800-46598200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr17:46596800-46599200	Enhancers	K562	blood
13	chr17:46597000-46597600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr17:46597000-46597800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr17:46597000-46597800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
16	chr17:46597000-46597800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
17	chr17:46597000-46597800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
18	chr17:46597000-46597800	Enhancers	A549	lung
19	chr17:46597000-46598200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
20	chr17:46597000-46598200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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