Variant report

Variant	rs60681913
Chromosome Location	chr17:46578016-46578017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46575874..46579148-chr17:46581240..46583659,4	MCF-7	breast:
2	chr17:46577717..46579696-chr17:46597150..46599532,2	MCF-7	breast:
3	chr17:46577428..46579209-chr17:46582700..46584447,2	K562	blood:
4	chr17:46577943..46580587-chr17:46630718..46633013,2	MCF-7	breast:
5	chr17:46560654..46562174-chr17:46577197..46578743,2	K562	blood:
6	chr17:46574039..46576397-chr17:46577646..46580624,4	MCF-7	breast:
7	chr17:46568685..46570931-chr17:46575612..46578799,3	MCF-7	breast:
8	chr17:46577718..46579309-chr17:46598159..46599775,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000120093	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57199687	1.00[AMR][1000 genomes]
rs58067327	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58218522	1.00[AFR][1000 genomes]
rs59555055	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59934148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61185573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61476017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73985849	1.00[AFR][1000 genomes]
rs73985851	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46574200-46578400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr17:46574200-46578600	Enhancers	HSMM	muscle
3	chr17:46574200-46579400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr17:46574600-46588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr17:46574800-46582800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr17:46574800-46582800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr17:46574800-46582800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr17:46576400-46578400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr17:46576600-46579600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr17:46576800-46579200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr17:46576800-46582000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr17:46577000-46578800	Enhancers	NH-A	brain
13	chr17:46577200-46578200	Weak transcription	Placenta	Placenta
14	chr17:46577200-46578800	Enhancers	Fetal Kidney	kidney
15	chr17:46577200-46579200	Enhancers	A549	lung
16	chr17:46577200-46582000	Enhancers	Fetal Stomach	stomach
17	chr17:46577400-46578600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr17:46577400-46579000	Enhancers	Rectal Smooth Muscle	rectum
19	chr17:46577400-46579400	Enhancers	K562	blood
20	chr17:46577600-46578800	Enhancers	NHLF	lung
21	chr17:46577800-46578800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr17:46577800-46579000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
23	chr17:46577800-46579200	Enhancers	Colon Smooth Muscle	Colon
24	chr17:46578000-46578200	Weak transcription	HSMMtube	muscle
25	chr17:46578000-46578400	Enhancers	Fetal Lung	lung
26	chr17:46578000-46578400	Enhancers	Stomach Smooth Muscle	stomach
27	chr17:46578000-46578800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links