Variant report

Variant	rs4826026
Chromosome Location	chrX:80021410-80021411
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12687572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17281706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17281713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826025	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4826027	0.86[CEU][hapmap]
rs4826028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6622299	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916218	chrX:79377399-80230929	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33127	chrX:79989618-80370141	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:79954800-80022200	Weak transcription	Fetal Intestine Small	intestine
2	chrX:79965600-80034200	Weak transcription	Left Ventricle	heart
3	chrX:79979600-80022400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chrX:79990800-80021800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chrX:79999800-80032000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chrX:80000400-80045800	Weak transcription	Dnd41	blood
7	chrX:80006000-80022200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chrX:80006400-80030200	Weak transcription	Primary B cells from cord blood	blood
9	chrX:80006600-80021600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chrX:80017800-80047200	Weak transcription	Primary B cells from peripheral blood	blood
11	chrX:80018000-80022800	Weak transcription	Small Intestine	intestine
12	chrX:80019000-80045400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chrX:80019200-80044600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chrX:80019400-80021800	Enhancers	HSMM	muscle
15	chrX:80019400-80032200	Weak transcription	Primary hematopoietic stem cells	blood
16	chrX:80019400-80055000	Weak transcription	Primary T cells from cord blood	blood
17	chrX:80020000-80021600	Weak transcription	Fetal Kidney	kidney
18	chrX:80020000-80063000	Weak transcription	Thymus	Thymus
19	chrX:80020200-80063600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chrX:80020400-80021800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chrX:80020600-80021600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chrX:80020800-80021600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chrX:80020800-80022200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chrX:80020800-80062800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chrX:80021000-80021600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chrX:80021000-80022000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chrX:80021000-80031600	Weak transcription	Ovary	ovary
28	chrX:80021000-80062600	Weak transcription	A549	lung
29	chrX:80021200-80022200	Weak transcription	Fetal Intestine Large	intestine
30	chrX:80021200-80028400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chrX:80021200-80040400	Weak transcription	Hela-S3	cervix
32	chrX:80021200-80063000	Weak transcription	Osteobl	bone
33	chrX:80021400-80022800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links