Variant report

Variant	rs4826028
Chromosome Location	chrX:80045245-80045246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12687572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17281706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17281713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826025	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4826026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826027	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916218	chrX:79377399-80230929	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33127	chrX:79989618-80370141	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:80000400-80045800	Weak transcription	Dnd41	blood
2	chrX:80017800-80047200	Weak transcription	Primary B cells from peripheral blood	blood
3	chrX:80019000-80045400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chrX:80019400-80055000	Weak transcription	Primary T cells from cord blood	blood
5	chrX:80020000-80063000	Weak transcription	Thymus	Thymus
6	chrX:80020200-80063600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chrX:80020800-80062800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chrX:80021000-80062600	Weak transcription	A549	lung
9	chrX:80021200-80063000	Weak transcription	Osteobl	bone
10	chrX:80022600-80063600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chrX:80022800-80045800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chrX:80022800-80063000	Weak transcription	Fetal Intestine Small	intestine
13	chrX:80023000-80046600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chrX:80023800-80045400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chrX:80025600-80063000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chrX:80026200-80061400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chrX:80028200-80047800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chrX:80028600-80049600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chrX:80028600-80063000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chrX:80031400-80045400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chrX:80031800-80047800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chrX:80032400-80063000	Weak transcription	Primary hematopoietic stem cells	blood
23	chrX:80032400-80063000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chrX:80032600-80062800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chrX:80033200-80046000	Weak transcription	Ovary	ovary
26	chrX:80034200-80062600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chrX:80035400-80062800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chrX:80036600-80062600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chrX:80036800-80062000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chrX:80037200-80062600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chrX:80037800-80054200	Weak transcription	Fetal Thymus	thymus
32	chrX:80038200-80062800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chrX:80038800-80047000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chrX:80039200-80049400	Weak transcription	NH-A	brain
35	chrX:80039800-80063000	Weak transcription	Brain Germinal Matrix	brain
36	chrX:80040000-80054400	Weak transcription	Fetal Stomach	stomach
37	chrX:80040000-80055400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chrX:80040000-80063000	Weak transcription	Duodenum Mucosa	Duodenum
39	chrX:80040200-80062800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chrX:80041400-80063000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chrX:80041600-80047800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chrX:80041800-80062600	Weak transcription	Fetal Intestine Large	intestine
43	chrX:80042000-80049200	Weak transcription	Fetal Lung	lung
44	chrX:80042200-80048400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chrX:80042200-80062400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chrX:80042800-80045800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chrX:80042800-80052200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chrX:80042800-80054600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chrX:80043000-80052600	Weak transcription	Fetal Kidney	kidney
50	chrX:80043400-80046600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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