Variant report

Variant	rs17281706
Chromosome Location	chrX:80030902-80030903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12687572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17281713	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs4826025	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs4826026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826027	1.00[ASW][hapmap];0.86[CEU][hapmap]
rs4826028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826191	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916218	chrX:79377399-80230929	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33127	chrX:79989618-80370141	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:79965600-80034200	Weak transcription	Left Ventricle	heart
2	chrX:79999800-80032000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chrX:80000400-80045800	Weak transcription	Dnd41	blood
4	chrX:80017800-80047200	Weak transcription	Primary B cells from peripheral blood	blood
5	chrX:80019000-80045400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chrX:80019200-80044600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chrX:80019400-80032200	Weak transcription	Primary hematopoietic stem cells	blood
8	chrX:80019400-80055000	Weak transcription	Primary T cells from cord blood	blood
9	chrX:80020000-80063000	Weak transcription	Thymus	Thymus
10	chrX:80020200-80063600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chrX:80020800-80062800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chrX:80021000-80031600	Weak transcription	Ovary	ovary
13	chrX:80021000-80062600	Weak transcription	A549	lung
14	chrX:80021200-80040400	Weak transcription	Hela-S3	cervix
15	chrX:80021200-80063000	Weak transcription	Osteobl	bone
16	chrX:80022600-80063600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chrX:80022800-80040000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chrX:80022800-80044200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chrX:80022800-80045800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chrX:80022800-80063000	Weak transcription	Fetal Intestine Small	intestine
21	chrX:80023000-80046600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chrX:80023600-80036000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chrX:80023800-80037600	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chrX:80023800-80045400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chrX:80025600-80063000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chrX:80026200-80061400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chrX:80026800-80031600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chrX:80028200-80047800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chrX:80028600-80049600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chrX:80028600-80063000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chrX:80029000-80044000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chrX:80030400-80044200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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