Variant report

Variant	rs4826025
Chromosome Location	chrX:79961448-79961449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12687572	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17281706	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs17281713	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs4826026	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4826027	1.00[ASW][hapmap];0.86[CEU][hapmap]
rs4826028	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4826191	1.00[ASW][hapmap]
rs6622299	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916218	chrX:79377399-80230929	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv532882	chrX:79884715-80017999	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv524776	chrX:79903169-80012807	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv533969	chrX:79915477-79989648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:79926200-79978000	Weak transcription	NH-A	brain
2	chrX:79928600-79962000	Weak transcription	Fetal Brain Female	brain
3	chrX:79930800-79962400	Weak transcription	Right Ventricle	heart
4	chrX:79930800-79987600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chrX:79931000-79971000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chrX:79931000-79982800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chrX:79931200-79985600	Weak transcription	A549	lung
8	chrX:79932800-79964200	Weak transcription	Colon Smooth Muscle	Colon
9	chrX:79932800-79984800	Weak transcription	Brain Anterior Caudate	brain
10	chrX:79933000-79972200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chrX:79933400-79972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chrX:79933400-79984600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chrX:79934600-79975200	Weak transcription	GM12878-XiMat	blood
14	chrX:79934800-79961600	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chrX:79935400-79986800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chrX:79936000-79977600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chrX:79936200-79980800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chrX:79936600-80000200	Weak transcription	Small Intestine	intestine
19	chrX:79937000-79982000	Weak transcription	HSMMtube	muscle
20	chrX:79937000-80003600	Weak transcription	Fetal Lung	lung
21	chrX:79940200-79972600	Weak transcription	Fetal Kidney	kidney
22	chrX:79940400-79964000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chrX:79942600-79977600	Weak transcription	HSMM	muscle
24	chrX:79943800-79984800	Weak transcription	Brain Germinal Matrix	brain
25	chrX:79944000-79969800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chrX:79947200-79975400	Weak transcription	Pancreas	Pancrea
27	chrX:79950200-79971400	Weak transcription	Spleen	Spleen
28	chrX:79950200-79980000	Weak transcription	Esophagus	oesophagus
29	chrX:79950400-79971600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chrX:79950400-80001600	Weak transcription	Placenta	Placenta
31	chrX:79950600-79963200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chrX:79950600-79965400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chrX:79950600-79968400	Weak transcription	Aorta	Aorta
34	chrX:79950600-79978800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chrX:79950600-80012000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chrX:79950800-79962200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chrX:79950800-79964800	Weak transcription	Left Ventricle	heart
38	chrX:79950800-79974600	Weak transcription	Gastric	stomach
39	chrX:79950800-79977200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chrX:79950800-79977800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chrX:79950800-79978000	Weak transcription	Fetal Muscle Trunk	muscle
42	chrX:79950800-79979200	Weak transcription	Thymus	Thymus
43	chrX:79950800-79979400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chrX:79950800-79981400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chrX:79950800-79984200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chrX:79950800-80008200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chrX:79951000-79977800	Weak transcription	Fetal Intestine Large	intestine
48	chrX:79951200-79987600	Weak transcription	Osteobl	bone
49	chrX:79951400-79979000	Weak transcription	Adipose Nuclei	Adipose
50	chrX:79951600-79969600	Weak transcription	Duodenum Mucosa	Duodenum

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