Variant report

Variant	rs4829219
Chromosome Location	chrX:31373984-31373985
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17338486	0.81[JPT][hapmap]
rs4143965	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs5927006	0.92[CEU][hapmap]
rs5927009	0.92[CEU][hapmap]
rs5927011	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs5927012	1.00[CEU][hapmap]
rs5927725	0.92[CEU][hapmap]
rs5927729	0.92[CEU][hapmap]
rs5927736	1.00[CEU][hapmap]
rs5927737	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs6527083	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap]
rs6628596	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs6631295	1.00[CEU][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530449	chrX:30962926-31375215	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv481896	chrX:31212683-31546984	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3407256	chrX:31214281-31548379	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv481964	chrX:31270220-31672751	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2758567	chrX:31363616-31519148	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31369200-31374200	Weak transcription	Gastric	stomach
2	chrX:31370200-31374600	Enhancers	Hela-S3	cervix
3	chrX:31371600-31374200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chrX:31371800-31375600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chrX:31372000-31374000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chrX:31372000-31375200	Weak transcription	Fetal Heart	heart
7	chrX:31373000-31375800	Enhancers	HepG2	liver
8	chrX:31373400-31376400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chrX:31373600-31374400	Enhancers	H9 Cell Line	embryonic stem cell
10	chrX:31373600-31374800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chrX:31373600-31377000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chrX:31373600-31377000	Enhancers	Liver	Liver
13	chrX:31373800-31374400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chrX:31373800-31376800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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