Variant report

Variant	rs6527083
Chromosome Location	chrX:31368634-31368635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17338486	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs2733458	0.83[MEX][hapmap]
rs4143965	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap]
rs4829219	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap]
rs5927006	0.87[ASW][hapmap];0.92[CEU][hapmap];0.89[MEX][hapmap]
rs5927009	0.92[CEU][hapmap];0.88[CHB][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap]
rs5927011	1.00[CEU][hapmap];0.88[GIH][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap]
rs5927012	1.00[CEU][hapmap];0.91[GIH][hapmap];0.93[TSI][hapmap]
rs5927725	0.92[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap]
rs5927729	0.92[CEU][hapmap];0.88[CHB][hapmap];0.81[GIH][hapmap];0.94[MEX][hapmap]
rs5927736	1.00[CEU][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs5927737	1.00[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.96[TSI][hapmap]
rs6628596	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap]
rs6631295	0.88[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.83[MEX][hapmap];0.92[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530449	chrX:30962926-31375215	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv481896	chrX:31212683-31546984	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3407256	chrX:31214281-31548379	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv481964	chrX:31270220-31672751	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2758567	chrX:31363616-31519148	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31367800-31369200	Enhancers	Liver	Liver
2	chrX:31367800-31369200	Enhancers	Gastric	stomach
3	chrX:31367800-31369400	Enhancers	Fetal Heart	heart
4	chrX:31367800-31369600	Enhancers	HepG2	liver
5	chrX:31368200-31369200	Enhancers	Hela-S3	cervix
6	chrX:31368400-31369200	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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