Variant report

Variant	rs5927006
Chromosome Location	chrX:31350331-31350332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17338486	0.81[GIH][hapmap]
rs4143965	0.92[CEU][hapmap];0.90[GIH][hapmap];0.84[MEX][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap]
rs4829219	0.92[CEU][hapmap]
rs5927009	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[CHD][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.96[TSI][hapmap]
rs5927011	0.92[CEU][hapmap]
rs5927012	0.92[CEU][hapmap]
rs5927725	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[CHD][hapmap];0.89[MEX][hapmap];0.96[TSI][hapmap]
rs5927729	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap]
rs5927730	0.86[TSI][hapmap]
rs5927736	0.92[CEU][hapmap]
rs5927737	0.92[CEU][hapmap];0.85[GIH][hapmap]
rs6527083	0.87[ASW][hapmap];0.92[CEU][hapmap];0.89[MEX][hapmap]
rs6628596	0.87[ASW][hapmap];0.92[CEU][hapmap];0.90[GIH][hapmap];0.94[MEX][hapmap]
rs6631295	0.92[CEU][hapmap];0.81[CHB][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530449	chrX:30962926-31375215	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv481896	chrX:31212683-31546984	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3407256	chrX:31214281-31548379	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv481964	chrX:31270220-31672751	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31338400-31355600	Weak transcription	HSMMtube	muscle
2	chrX:31345400-31356000	Weak transcription	Aorta	Aorta
3	chrX:31348000-31352600	Enhancers	Fetal Heart	heart
4	chrX:31349200-31351800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chrX:31349200-31351800	Enhancers	K562	blood
6	chrX:31349600-31351000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chrX:31349600-31352800	Enhancers	Hela-S3	cervix
8	chrX:31349800-31350400	Enhancers	Left Ventricle	heart
9	chrX:31350000-31350400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chrX:31350000-31350600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chrX:31350000-31352000	Enhancers	HMEC	breast
12	chrX:31350200-31350600	Enhancers	Right Atrium	heart
13	chrX:31350200-31351800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chrX:31350200-31352000	Enhancers	NHEK	skin
15	chrX:31350200-31352200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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