Variant report

Variant	rs5927736
Chromosome Location	chrX:31376888-31376889
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17338486	0.90[ASW][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.86[MKK][hapmap];0.95[YRI][hapmap]
rs2733458	0.80[ASW][hapmap]
rs4143965	1.00[CEU][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap]
rs4829219	1.00[CEU][hapmap]
rs5927006	0.92[CEU][hapmap]
rs5927009	0.92[CEU][hapmap];0.85[GIH][hapmap]
rs5927011	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5927012	1.00[CEU][hapmap];0.97[GIH][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap]
rs5927725	0.92[CEU][hapmap]
rs5927729	0.92[CEU][hapmap];0.82[GIH][hapmap]
rs5927737	0.90[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.89[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap]
rs6527083	1.00[CEU][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs6628596	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.96[TSI][hapmap]
rs6631295	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.96[TSI][hapmap]
rs6631303	0.82[ASW][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv481896	chrX:31212683-31546984	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3407256	chrX:31214281-31548379	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv481964	chrX:31270220-31672751	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758567	chrX:31363616-31519148	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31373600-31377000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chrX:31373600-31377000	Enhancers	Liver	Liver
3	chrX:31375600-31377200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chrX:31375800-31377000	Enhancers	Hela-S3	cervix
5	chrX:31376400-31377800	Weak transcription	Ovary	ovary
6	chrX:31376800-31377000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chrX:31376800-31377000	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links