Variant report

Variant	rs4838613
Chromosome Location	chr10:49736151-49736152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49735860..49737955-chr10:49741189..49744599,4	K562	blood:
2	chr10:49735319..49737955-chr10:49741189..49744071,3	K562	blood:
3	chr10:49728278..49730506-chr10:49735038..49737361,2	K562	blood:
4	chr10:49729006..49734314-chr10:49734624..49737361,4	K562	blood:

Variant related genes	Relation type
ENSG00000128805	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10776611	0.91[ASN][1000 genomes]
rs10776612	0.92[ASN][1000 genomes]
rs10776613	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10857593	0.91[ASN][1000 genomes]
rs11101372	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34223875	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4012792	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4838416	0.82[ASN][1000 genomes]
rs4838616	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7088885	0.95[ASN][1000 genomes]
rs7896115	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7910327	0.83[ASN][1000 genomes]
rs7918009	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49732200-49750800	Weak transcription	Gastric	stomach
2	chr10:49732800-49736200	Enhancers	HUVEC	blood vessel
3	chr10:49732800-49736800	Weak transcription	Right Atrium	heart
4	chr10:49732800-49742000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:49733800-49736800	Enhancers	Brain Substantia Nigra	brain
6	chr10:49734400-49743400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:49734400-49762400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:49734600-49736600	Enhancers	NHDF-Ad	bronchial
9	chr10:49734800-49741800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:49734800-49743200	Weak transcription	HMEC	breast
11	chr10:49735200-49736400	Enhancers	Osteobl	bone
12	chr10:49735400-49736400	Enhancers	NHLF	lung
13	chr10:49735400-49742000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:49735400-49742000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:49735400-49749400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:49735400-49756800	Weak transcription	HSMMtube	muscle
17	chr10:49735600-49738200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:49735600-49738200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:49735600-49739400	Weak transcription	NH-A	brain
20	chr10:49735600-49739600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:49735600-49743200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:49735600-49755600	Weak transcription	Brain Angular Gyrus	brain
23	chr10:49735800-49736400	Weak transcription	Ovary	ovary
24	chr10:49735800-49739200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:49736000-49737800	Strong transcription	HSMM	muscle
26	chr10:49736000-49741000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:49736000-49742000	Weak transcription	Brain Cingulate Gyrus	brain

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