Variant report

Variant	rs7896115
Chromosome Location	chr10:49730982-49730983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49730645..49732196-chr10:49747881..49750168,2	K562	blood:
2	chr10:49729429..49732074-chr10:49751131..49754040,2	K562	blood:
3	chr10:49514209..49516197-chr10:49729789..49731994,3	K562	blood:
4	chr10:49684170..49687660-chr10:49728231..49732129,4	K562	blood:
5	chr10:49514209..49515853-chr10:49729935..49731994,2	K562	blood:

Variant related genes	Relation type
ENSG00000128805	Chromatin interaction
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10776611	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10776612	0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10776613	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10857593	0.92[ASN][1000 genomes]
rs10857594	0.94[AMR][1000 genomes]
rs11101348	0.91[CHD][hapmap];0.90[JPT][hapmap];0.84[MKK][hapmap]
rs11101349	0.91[CHD][hapmap];0.90[JPT][hapmap]
rs11101370	0.80[JPT][hapmap]
rs11101371	0.80[JPT][hapmap]
rs11101372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12763969	0.90[JPT][hapmap]
rs12768718	0.91[CHD][hapmap];0.90[JPT][hapmap]
rs2278676	0.82[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34223875	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4012792	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4838413	0.90[JPT][hapmap]
rs4838416	0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4838608	0.91[CHD][hapmap];0.90[JPT][hapmap]
rs4838609	0.91[CHD][hapmap];0.90[JPT][hapmap]
rs4838613	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4838616	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6537565	0.91[CHD][hapmap];0.90[JPT][hapmap]
rs7088885	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7098760	0.91[CHD][hapmap];0.90[JPT][hapmap]
rs7910327	0.82[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7918009	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs935273	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv550814	chr10:49705142-49735563	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49698000-49731200	Weak transcription	Aorta	Aorta
2	chr10:49721400-49732000	Weak transcription	HMEC	breast
3	chr10:49724000-49731000	Weak transcription	HUVEC	blood vessel
4	chr10:49727000-49731000	Weak transcription	Pancreas	Pancrea
5	chr10:49728200-49731000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:49728400-49731000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:49729000-49731000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:49729000-49731000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:49729600-49731000	Enhancers	NHDF-Ad	bronchial
10	chr10:49729600-49731000	Enhancers	NHLF	lung
11	chr10:49729600-49731200	Bivalent Enhancer	Fetal Stomach	stomach
12	chr10:49729600-49731200	Enhancers	HSMM	muscle
13	chr10:49729600-49731200	Enhancers	HSMMtube	muscle
14	chr10:49729800-49731000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:49729800-49731000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:49729800-49731000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:49729800-49731200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:49729800-49731800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:49730000-49731000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:49730000-49731200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:49730000-49731200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr10:49730000-49731200	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr10:49730000-49731800	Enhancers	Brain Angular Gyrus	brain
24	chr10:49730000-49731800	Enhancers	Brain Substantia Nigra	brain
25	chr10:49730200-49731200	Enhancers	Brain Hippocampus Middle	brain
26	chr10:49730200-49731200	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr10:49730200-49731200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr10:49730200-49731200	Enhancers	Ovary	ovary
29	chr10:49730200-49731600	Flanking Active TSS	K562	blood
30	chr10:49730400-49731000	Enhancers	NH-A	brain
31	chr10:49730400-49731200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
32	chr10:49730400-49731200	Enhancers	Right Ventricle	heart
33	chr10:49730400-49731600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr10:49730400-49731800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:49730600-49731000	Enhancers	H1 Cell Line	embryonic stem cell
36	chr10:49730600-49731000	Enhancers	Rectal Smooth Muscle	rectum
37	chr10:49730600-49731000	Genic enhancers	Osteobl	bone
38	chr10:49730600-49731200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:49730600-49731200	Enhancers	Muscle Satellite Cultured Cells	--
40	chr10:49730600-49731800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:49730600-49732000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:49730600-49732200	Flanking Active TSS	Stomach Smooth Muscle	stomach
43	chr10:49730800-49731000	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr10:49730800-49731000	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:49730800-49731000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
46	chr10:49730800-49731000	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr10:49730800-49731000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
48	chr10:49730800-49731000	Enhancers	Colon Smooth Muscle	Colon
49	chr10:49730800-49731000	Bivalent Enhancer	Fetal Intestine Small	intestine
50	chr10:49730800-49731000	Enhancers	A549	lung

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