Variant report

Variant	rs4838616
Chromosome Location	chr10:49739555-49739556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10776611	0.81[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10776612	0.81[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10776613	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857593	0.91[ASN][1000 genomes]
rs10857594	0.94[AMR][1000 genomes]
rs11101348	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs11101349	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs11101372	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763969	0.84[JPT][hapmap]
rs12768718	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs1947075	0.80[JPT][hapmap]
rs2278676	0.88[CHD][hapmap];0.89[JPT][hapmap]
rs34223875	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4012792	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838413	0.84[JPT][hapmap]
rs4838416	0.88[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4838417	0.80[JPT][hapmap]
rs4838608	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs4838609	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs4838613	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6537565	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs7088885	0.95[ASN][1000 genomes]
rs7098760	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs7896115	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7910327	0.88[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs7918009	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49732200-49750800	Weak transcription	Gastric	stomach
2	chr10:49732800-49742000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:49734400-49743400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:49734400-49762400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:49734800-49741800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:49734800-49743200	Weak transcription	HMEC	breast
7	chr10:49735400-49742000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:49735400-49742000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:49735400-49749400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:49735400-49756800	Weak transcription	HSMMtube	muscle
11	chr10:49735600-49739600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:49735600-49743200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:49735600-49755600	Weak transcription	Brain Angular Gyrus	brain
14	chr10:49736000-49741000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:49736000-49742000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:49736200-49749400	Weak transcription	HUVEC	blood vessel
17	chr10:49736800-49742200	Weak transcription	Brain Substantia Nigra	brain
18	chr10:49737200-49741600	Weak transcription	Osteobl	bone
19	chr10:49737800-49741600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:49738600-49740200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:49739200-49740200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:49739200-49740400	Enhancers	NHDF-Ad	bronchial
23	chr10:49739400-49739600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:49739400-49739800	Enhancers	NH-A	brain
25	chr10:49739400-49740200	Enhancers	NHLF	lung
26	chr10:49739400-49741400	Strong transcription	HSMM	muscle
27	chr10:49739400-49762400	Weak transcription	Stomach Smooth Muscle	stomach

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