Variant report

Variant	rs4865868
Chromosome Location	chr5:54027524-54027525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10063480	0.81[EUR][1000 genomes]
rs11741898	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12516090	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12516335	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12516850	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1373990	0.93[EUR][1000 genomes]
rs1562232	0.95[EUR][1000 genomes]
rs2121132	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3923240	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4282276	0.95[EUR][1000 genomes]
rs4286627	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4348178	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4353983	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4353984	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4359998	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4588542	0.97[ASN][1000 genomes]
rs4604146	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4865867	0.97[ASN][1000 genomes]
rs6450240	0.95[EUR][1000 genomes]
rs6450242	0.95[EUR][1000 genomes]
rs6881842	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6893796	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7719575	0.95[EUR][1000 genomes]
rs7727742	0.95[EUR][1000 genomes]
rs9292068	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs977207	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs977208	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs977209	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54017000-54038000	Weak transcription	Aorta	Aorta
2	chr5:54026200-54031600	Weak transcription	Fetal Heart	heart
3	chr5:54027400-54035800	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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