Variant report

Variant	rs1373990
Chromosome Location	chr5:53991566-53991567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:53989884..53992585-chr5:53999532..54002078,2	K562	blood:
2	chr5:53991357..53995095-chr5:53995631..53999040,4	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10063480	0.81[EUR][1000 genomes]
rs12516090	0.84[EUR][1000 genomes]
rs12516335	0.84[EUR][1000 genomes]
rs12516850	0.84[EUR][1000 genomes]
rs12659365	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1542165	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1562232	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1867684	0.94[ASN][1000 genomes]
rs2121132	0.84[EUR][1000 genomes]
rs3923240	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4242042	0.89[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs4282276	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4286627	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4302535	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4348178	0.84[EUR][1000 genomes]
rs4353983	0.84[EUR][1000 genomes]
rs4353984	0.84[EUR][1000 genomes]
rs4359998	0.84[EUR][1000 genomes]
rs4429808	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4604146	0.84[EUR][1000 genomes]
rs4627947	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865582	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865583	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865584	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865864	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865866	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865868	0.93[EUR][1000 genomes]
rs6450239	0.96[ASN][1000 genomes]
rs6450240	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6450242	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6876610	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6893796	0.93[EUR][1000 genomes]
rs6894873	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7706028	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7719575	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7727742	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9292068	0.81[EUR][1000 genomes]
rs977207	0.84[EUR][1000 genomes]
rs977208	0.84[EUR][1000 genomes]
rs977209	0.83[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:53986800-53992800	Weak transcription	HSMMtube	muscle
2	chr5:53987000-53992600	Weak transcription	Osteobl	bone
3	chr5:53987400-53999600	Weak transcription	Pancreas	Pancrea
4	chr5:53987600-53997800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:53988400-53995200	Enhancers	Fetal Lung	lung
6	chr5:53988600-53991600	Weak transcription	Adipose Nuclei	Adipose
7	chr5:53988600-53992200	Weak transcription	Right Atrium	heart
8	chr5:53989000-53992200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:53989200-53992000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:53989800-53993000	Enhancers	Brain Substantia Nigra	brain
11	chr5:53989800-53995000	Enhancers	Fetal Stomach	stomach
12	chr5:53990000-53991600	Weak transcription	Ovary	ovary
13	chr5:53990000-53992200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr5:53990000-53993200	Enhancers	Brain Cingulate Gyrus	brain
15	chr5:53990000-53999000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:53990200-53991600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:53990400-53991600	Weak transcription	Fetal Muscle Leg	muscle
18	chr5:53990400-53992200	Weak transcription	Colon Smooth Muscle	Colon
19	chr5:53990400-53992800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:53990600-53991600	Weak transcription	Lung	lung
21	chr5:53990600-53992800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr5:53990600-53994000	Weak transcription	Fetal Heart	heart
23	chr5:53990600-53994800	Weak transcription	Left Ventricle	heart
24	chr5:53990600-53999000	Weak transcription	Right Ventricle	heart
25	chr5:53990800-53992000	Weak transcription	Fetal Brain Male	brain
26	chr5:53990800-53992000	Weak transcription	Fetal Brain Female	brain
27	chr5:53990800-53992000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr5:53990800-53992600	Enhancers	Brain Hippocampus Middle	brain
29	chr5:53990800-53992600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr5:53990800-53998800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:53991000-53992000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr5:53991200-53992400	Weak transcription	Brain Germinal Matrix	brain
33	chr5:53991200-53995000	Weak transcription	NHLF	lung
34	chr5:53991400-53991800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr5:53991400-53992200	Enhancers	Brain Anterior Caudate	brain
36	chr5:53991400-53993000	Enhancers	Aorta	Aorta
37	chr5:53991400-53994000	Enhancers	Stomach Smooth Muscle	stomach

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