Variant report

Variant	rs4865866
Chromosome Location	chr5:53999592-53999593
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:53975288..53977099-chr5:53997227..53999816,2	K562	blood:
2	chr5:53989884..53992585-chr5:53999532..54002078,2	K562	blood:
3	chr5:53958179..53960910-chr5:53999007..54001580,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12523476	0.92[EUR][1000 genomes]
rs12659365	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13164810	0.94[EUR][1000 genomes]
rs1373990	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1542165	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1562232	0.98[ASN][1000 genomes]
rs1823055	0.82[EUR][1000 genomes]
rs1867684	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35429219	0.89[EUR][1000 genomes]
rs4242042	0.90[JPT][hapmap]
rs4282276	0.94[ASN][1000 genomes]
rs4286627	0.84[ASN][1000 genomes]
rs4302535	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429808	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485879	0.94[EUR][1000 genomes]
rs4562000	0.82[EUR][1000 genomes]
rs4588542	0.94[EUR][1000 genomes]
rs4627947	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865582	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865583	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865584	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865864	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865867	0.93[EUR][1000 genomes]
rs56046642	0.95[EUR][1000 genomes]
rs6450239	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6450240	0.95[ASN][1000 genomes]
rs6450242	0.94[ASN][1000 genomes]
rs6450243	0.93[EUR][1000 genomes]
rs6876610	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877012	0.91[EUR][1000 genomes]
rs6894873	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706028	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719575	0.94[ASN][1000 genomes]
rs7727742	0.94[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:53987400-53999600	Weak transcription	Pancreas	Pancrea
2	chr5:53995800-53999800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:53996000-53999600	Enhancers	HMEC	breast
4	chr5:53996200-54000000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:53996600-53999800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:53996600-53999800	Enhancers	Osteobl	bone
7	chr5:53996800-53999600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:53996800-53999600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:53996800-54001600	Enhancers	Fetal Heart	heart
10	chr5:53997200-53999800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:53997200-54000000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:53997400-54000200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr5:53997800-53999800	Enhancers	Stomach Smooth Muscle	stomach
14	chr5:53997800-53999800	Flanking Active TSS	HSMMtube	muscle
15	chr5:53997800-54000000	Enhancers	Fetal Intestine Large	intestine
16	chr5:53998000-53999800	Enhancers	Liver	Liver
17	chr5:53998200-53999600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:53998200-54000000	Enhancers	Colon Smooth Muscle	Colon
19	chr5:53998200-54000400	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr5:53998200-54001000	Enhancers	Fetal Intestine Small	intestine
21	chr5:53998200-54002200	Enhancers	Fetal Lung	lung
22	chr5:53998400-54000000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:53998400-54000400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr5:53998600-53999600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:53998600-53999800	Enhancers	Duodenum Mucosa	Duodenum
26	chr5:53998600-54000000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr5:53998600-54000000	Enhancers	Fetal Muscle Leg	muscle
28	chr5:53998600-54000000	Enhancers	Stomach Mucosa	stomach
29	chr5:53998600-54000400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:53998800-53999600	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr5:53998800-53999600	Enhancers	Primary B cells from peripheral blood	blood
32	chr5:53998800-53999800	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr5:53998800-53999800	Enhancers	Rectal Smooth Muscle	rectum
34	chr5:53998800-53999800	Enhancers	Right Atrium	heart
35	chr5:53998800-54000000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:53998800-54000000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr5:53998800-54001400	Enhancers	Fetal Stomach	stomach
38	chr5:53999000-53999600	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr5:53999000-53999600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr5:53999000-53999600	Enhancers	Ovary	ovary
41	chr5:53999000-53999800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr5:53999000-53999800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr5:53999000-53999800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr5:53999000-53999800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr5:53999000-53999800	Enhancers	Esophagus	oesophagus
46	chr5:53999000-53999800	Enhancers	Gastric	stomach
47	chr5:53999000-53999800	Enhancers	Left Ventricle	heart
48	chr5:53999000-53999800	Enhancers	Lung	lung
49	chr5:53999000-53999800	Enhancers	Spleen	Spleen
50	chr5:53999000-54000000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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