Variant report

Variant	rs4865582
Chromosome Location	chr5:53993648-53993649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:53991357..53995095-chr5:53995631..53999040,4	K562	blood:
2	chr5:53991674..53993774-chr5:53995375..53997349,2	MCF-7	breast:
3	chr5:53992795..53995364-chr5:53999783..54001993,2	K562	blood:
4	chr5:53986830..53988520-chr5:53991952..53993684,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12523476	0.92[EUR][1000 genomes]
rs12659365	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13164810	0.94[EUR][1000 genomes]
rs1373990	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1542165	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1562232	0.98[ASN][1000 genomes]
rs1823055	0.82[EUR][1000 genomes]
rs1867684	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35429219	0.89[EUR][1000 genomes]
rs4242042	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs4282276	0.94[ASN][1000 genomes]
rs4286627	0.84[ASN][1000 genomes]
rs4302535	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429808	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485879	0.94[EUR][1000 genomes]
rs4562000	0.82[EUR][1000 genomes]
rs4588542	0.94[EUR][1000 genomes]
rs4627947	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865583	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865584	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865864	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865866	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865867	0.93[EUR][1000 genomes]
rs56046642	0.95[EUR][1000 genomes]
rs6450239	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6450240	0.95[ASN][1000 genomes]
rs6450242	0.94[ASN][1000 genomes]
rs6450243	0.93[EUR][1000 genomes]
rs6876610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877012	0.91[EUR][1000 genomes]
rs6894873	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706028	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719575	0.94[ASN][1000 genomes]
rs7727742	0.94[ASN][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:53987400-53999600	Weak transcription	Pancreas	Pancrea
2	chr5:53987600-53997800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:53988400-53995200	Enhancers	Fetal Lung	lung
4	chr5:53989800-53995000	Enhancers	Fetal Stomach	stomach
5	chr5:53990000-53999000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:53990600-53994000	Weak transcription	Fetal Heart	heart
7	chr5:53990600-53994800	Weak transcription	Left Ventricle	heart
8	chr5:53990600-53999000	Weak transcription	Right Ventricle	heart
9	chr5:53990800-53998800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:53991200-53995000	Weak transcription	NHLF	lung
11	chr5:53991400-53994000	Enhancers	Stomach Smooth Muscle	stomach
12	chr5:53992000-53994000	Enhancers	Fetal Brain Male	brain
13	chr5:53992000-53994000	Enhancers	Rectal Smooth Muscle	rectum
14	chr5:53992200-53993800	Enhancers	Colon Smooth Muscle	Colon
15	chr5:53992200-53993800	Weak transcription	Lung	lung
16	chr5:53992200-53994400	Weak transcription	Brain Anterior Caudate	brain
17	chr5:53992200-53994800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr5:53992400-53994000	Enhancers	Brain Germinal Matrix	brain
19	chr5:53992600-53998400	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:53992800-53997000	Weak transcription	Adipose Nuclei	Adipose
21	chr5:53992800-53997800	Enhancers	HSMMtube	muscle
22	chr5:53993000-53993800	Weak transcription	Aorta	Aorta
23	chr5:53993000-53994400	Weak transcription	Right Atrium	heart
24	chr5:53993000-53994600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:53993000-53994600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:53993000-53994600	Weak transcription	NHDF-Ad	bronchial
27	chr5:53993000-53996600	Weak transcription	Osteobl	bone
28	chr5:53993000-53997000	Weak transcription	Ovary	ovary
29	chr5:53993000-53997600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr5:53993000-53998400	Weak transcription	Brain Substantia Nigra	brain
31	chr5:53993000-53999000	Weak transcription	Placenta	Placenta
32	chr5:53993200-53994400	Weak transcription	HSMM	muscle
33	chr5:53993200-53994600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:53993200-53995800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:53993200-53996600	Weak transcription	Fetal Brain Female	brain
36	chr5:53993200-53997200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr5:53993200-53998200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr5:53993200-53998400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr5:53993200-53998600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr5:53993400-53998200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr5:53993400-53998600	Weak transcription	Fetal Muscle Leg	muscle
42	chr5:53993600-53993800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links