Variant report

Variant	rs12659365
Chromosome Location	chr5:53989412-53989413
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:53988043..53990652-chr5:53996716..53998540,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12523476	0.92[EUR][1000 genomes]
rs13164810	0.94[EUR][1000 genomes]
rs1373990	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1542165	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1562232	0.97[ASN][1000 genomes]
rs1823055	0.82[EUR][1000 genomes]
rs1867684	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35429219	0.89[EUR][1000 genomes]
rs4242042	0.84[JPT][hapmap]
rs4282276	0.93[ASN][1000 genomes]
rs4286627	0.83[ASN][1000 genomes]
rs4302535	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4429808	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4485879	0.94[EUR][1000 genomes]
rs4562000	0.82[EUR][1000 genomes]
rs4588542	0.94[EUR][1000 genomes]
rs4627947	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865582	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865583	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865584	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865864	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865866	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865867	0.93[EUR][1000 genomes]
rs56046642	0.95[EUR][1000 genomes]
rs6450239	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6450240	0.94[ASN][1000 genomes]
rs6450242	0.93[ASN][1000 genomes]
rs6450243	0.93[EUR][1000 genomes]
rs6876610	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6877012	0.91[EUR][1000 genomes]
rs6894873	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7706028	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7719575	0.93[ASN][1000 genomes]
rs7727742	0.93[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:53976200-53991000	Weak transcription	NHLF	lung
2	chr5:53986800-53992800	Weak transcription	HSMMtube	muscle
3	chr5:53987000-53989600	Weak transcription	Aorta	Aorta
4	chr5:53987000-53992600	Weak transcription	Osteobl	bone
5	chr5:53987400-53999600	Weak transcription	Pancreas	Pancrea
6	chr5:53987600-53997800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr5:53988200-53989800	Weak transcription	Lung	lung
8	chr5:53988400-53995200	Enhancers	Fetal Lung	lung
9	chr5:53988600-53989600	Weak transcription	Fetal Muscle Leg	muscle
10	chr5:53988600-53989600	Weak transcription	Ovary	ovary
11	chr5:53988600-53989800	Weak transcription	Left Ventricle	heart
12	chr5:53988600-53991600	Weak transcription	Adipose Nuclei	Adipose
13	chr5:53988600-53992200	Weak transcription	Right Atrium	heart
14	chr5:53989000-53992200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr5:53989200-53990600	Enhancers	Fetal Heart	heart
16	chr5:53989200-53992000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links