The 2.0 version of rSNPBase

Variant report

Variant rs4865584
Chromosome Location chr5:53998601-53998602
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:53987400-53999600 Weak transcription Pancreas Pancrea
2 chr5:53990000-53999000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr5:53990600-53999000 Weak transcription Right Ventricle heart
4 chr5:53990800-53998800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr5:53993000-53999000 Weak transcription Placenta Placenta
6 chr5:53994000-53998800 Weak transcription Rectal Smooth Muscle rectum
7 chr5:53994000-53999000 Weak transcription Fetal Brain Male brain
8 chr5:53994200-53998800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr5:53994600-53999000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr5:53995800-53999800 Enhancers Breast Myoepithelial Primary Cells Breast
11 chr5:53996000-53999000 Weak transcription Left Ventricle heart
12 chr5:53996000-53999600 Enhancers HMEC breast
13 chr5:53996200-54000000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr5:53996400-53999400 Enhancers Muscle Satellite Cultured Cells --
15 chr5:53996600-53999200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr5:53996600-53999400 Enhancers NHLF lung
17 chr5:53996600-53999800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr5:53996600-53999800 Enhancers Osteobl bone
19 chr5:53996800-53999600 Enhancers Primary monocytes fromperipheralblood blood
20 chr5:53996800-53999600 Enhancers Monocytes-CD14+_RO01746 blood
21 chr5:53996800-54001600 Enhancers Fetal Heart heart
22 chr5:53997200-53999800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
23 chr5:53997200-54000000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
24 chr5:53997400-53998800 Weak transcription Fetal Stomach stomach
25 chr5:53997400-53999000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr5:53997400-53999000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr5:53997400-53999000 Weak transcription Ovary ovary
28 chr5:53997400-53999000 Weak transcription Spleen Spleen
29 chr5:53997400-54000200 Enhancers Fetal Adrenal Gland Adrenal Gland
30 chr5:53997600-53998800 Weak transcription Hela-S3 cervix
31 chr5:53997600-53999400 Enhancers HUVEC blood vessel
32 chr5:53997800-53999000 Weak transcription Gastric stomach
33 chr5:53997800-53999000 Flanking Active TSS HSMM muscle
34 chr5:53997800-53999400 Active TSS Aorta Aorta
35 chr5:53997800-53999400 Enhancers Skeletal Muscle Female skeletal muscle
36 chr5:53997800-53999800 Enhancers Stomach Smooth Muscle stomach
37 chr5:53997800-53999800 Flanking Active TSS HSMMtube muscle
38 chr5:53997800-54000000 Enhancers Fetal Intestine Large intestine
39 chr5:53998000-53999400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr5:53998000-53999800 Enhancers Liver Liver
41 chr5:53998200-53998800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr5:53998200-53999000 Enhancers Small Intestine intestine
43 chr5:53998200-53999200 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
44 chr5:53998200-53999200 Enhancers NHEK skin
45 chr5:53998200-53999400 Enhancers Skeletal Muscle Male skeletal muscle
46 chr5:53998200-53999600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
47 chr5:53998200-54000000 Enhancers Colon Smooth Muscle Colon
48 chr5:53998200-54000400 Enhancers Duodenum Smooth Muscle Duodenum
49 chr5:53998200-54001000 Enhancers Fetal Intestine Small intestine
50 chr5:53998200-54002200 Enhancers Fetal Lung lung

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Last update: Aug 31, 2015