Variant report

Variant	rs6450239
Chromosome Location	chr5:53996321-53996322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:53991357..53995095-chr5:53995631..53999040,4	K562	blood:
2	chr5:53996151..53998533-chr5:54037504..54039404,2	K562	blood:
3	chr5:53991674..53993774-chr5:53995375..53997349,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12523476	0.91[EUR][1000 genomes]
rs12659365	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13164810	0.92[EUR][1000 genomes]
rs1373990	0.96[ASN][1000 genomes]
rs1542165	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1562232	0.98[ASN][1000 genomes]
rs1823055	0.81[EUR][1000 genomes]
rs1867684	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35429219	0.88[EUR][1000 genomes]
rs4242042	0.90[JPT][hapmap]
rs4282276	0.94[ASN][1000 genomes]
rs4286627	0.84[ASN][1000 genomes]
rs4302535	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429808	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485879	0.93[EUR][1000 genomes]
rs4562000	0.81[EUR][1000 genomes]
rs4588542	0.93[EUR][1000 genomes]
rs4627947	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865582	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865583	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865584	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865864	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865866	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865867	0.92[EUR][1000 genomes]
rs56046642	0.94[EUR][1000 genomes]
rs6450240	0.95[ASN][1000 genomes]
rs6450242	0.94[ASN][1000 genomes]
rs6450243	0.91[EUR][1000 genomes]
rs6876610	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877012	0.89[EUR][1000 genomes]
rs6894873	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706028	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719575	0.94[ASN][1000 genomes]
rs7727742	0.94[ASN][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:53987400-53999600	Weak transcription	Pancreas	Pancrea
2	chr5:53987600-53997800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:53990000-53999000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:53990600-53999000	Weak transcription	Right Ventricle	heart
5	chr5:53990800-53998800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:53992600-53998400	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:53992800-53997000	Weak transcription	Adipose Nuclei	Adipose
8	chr5:53992800-53997800	Enhancers	HSMMtube	muscle
9	chr5:53993000-53996600	Weak transcription	Osteobl	bone
10	chr5:53993000-53997000	Weak transcription	Ovary	ovary
11	chr5:53993000-53997600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:53993000-53998400	Weak transcription	Brain Substantia Nigra	brain
13	chr5:53993000-53999000	Weak transcription	Placenta	Placenta
14	chr5:53993200-53996600	Weak transcription	Fetal Brain Female	brain
15	chr5:53993200-53997200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:53993200-53998200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr5:53993200-53998400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr5:53993200-53998600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:53993400-53998200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:53993400-53998600	Weak transcription	Fetal Muscle Leg	muscle
21	chr5:53993800-53996600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:53993800-53998200	Weak transcription	Colon Smooth Muscle	Colon
23	chr5:53994000-53997800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:53994000-53998800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr5:53994000-53999000	Weak transcription	Fetal Brain Male	brain
26	chr5:53994200-53998800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:53994400-53997800	Enhancers	HSMM	muscle
28	chr5:53994600-53996800	Weak transcription	Fetal Heart	heart
29	chr5:53994600-53999000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:53994800-53997400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr5:53995000-53997000	Weak transcription	Fetal Stomach	stomach
32	chr5:53995000-53998400	Enhancers	NH-A	brain
33	chr5:53995200-53996800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr5:53995200-53997200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr5:53995200-53998200	Weak transcription	Fetal Lung	lung
36	chr5:53995400-53996400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr5:53995400-53996600	Weak transcription	NHDF-Ad	bronchial
38	chr5:53995400-53996600	Weak transcription	NHLF	lung
39	chr5:53995800-53999800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr5:53996000-53997600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr5:53996000-53997800	Weak transcription	Aorta	Aorta
42	chr5:53996000-53999000	Weak transcription	Left Ventricle	heart
43	chr5:53996000-53999600	Enhancers	HMEC	breast
44	chr5:53996200-54000000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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