Variant report

Variant	rs1867684
Chromosome Location	chr5:54004176-54004177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12523476	0.89[EUR][1000 genomes]
rs12659365	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13164810	0.91[EUR][1000 genomes]
rs1373990	0.94[ASN][1000 genomes]
rs1542165	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1562232	0.96[ASN][1000 genomes]
rs35429219	0.86[EUR][1000 genomes]
rs4282276	0.91[ASN][1000 genomes]
rs4286627	0.81[ASN][1000 genomes]
rs4302535	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4429808	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4485879	0.91[EUR][1000 genomes]
rs4588542	0.91[EUR][1000 genomes]
rs4627947	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4865582	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4865583	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4865584	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4865864	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4865866	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4865867	0.90[EUR][1000 genomes]
rs56046642	0.92[EUR][1000 genomes]
rs6450239	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6450240	0.92[ASN][1000 genomes]
rs6450242	0.91[ASN][1000 genomes]
rs6450243	0.90[EUR][1000 genomes]
rs6876610	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6877012	0.88[EUR][1000 genomes]
rs6894873	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7706028	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7719575	0.91[ASN][1000 genomes]
rs7727742	0.91[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:53999800-54009400	Weak transcription	Aorta	Aorta
2	chr5:53999800-54009600	Weak transcription	Right Atrium	heart
3	chr5:54000000-54005000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:54000000-54005000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:54000200-54005600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:54002600-54005000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:54002600-54009600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:54003200-54009400	Weak transcription	Fetal Heart	heart
9	chr5:54003600-54004200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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