Variant report

Variant	rs4485879
Chromosome Location	chr5:54026811-54026812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:53965327..53967848-chr5:54025605..54028279,2	MCF-7	breast:
2	chr5:54018088..54021349-chr5:54022983..54028263,5	K562	blood:
3	chr5:54017504..54021673-chr5:54022029..54028384,8	K562	blood:
4	chr5:54024735..54028634-chr5:54029831..54032905,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12516090	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12516335	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12516850	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12516870	0.92[AFR][1000 genomes]
rs12523476	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12659365	0.94[EUR][1000 genomes]
rs13164810	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1542165	0.94[EUR][1000 genomes]
rs1823055	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1867684	0.91[EUR][1000 genomes]
rs1979010	0.81[AFR][1000 genomes]
rs1979011	0.81[AFR][1000 genomes]
rs2121132	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35429219	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4242042	0.80[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs4302535	0.94[EUR][1000 genomes]
rs4348178	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4353983	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4353984	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4359998	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4429808	0.94[EUR][1000 genomes]
rs4482860	0.87[AFR][1000 genomes]
rs4498221	0.84[ASN][1000 genomes]
rs4562000	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4588542	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4604146	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4624748	0.84[ASN][1000 genomes]
rs4627947	0.94[EUR][1000 genomes]
rs4865582	0.94[EUR][1000 genomes]
rs4865583	0.94[EUR][1000 genomes]
rs4865584	0.94[EUR][1000 genomes]
rs4865864	0.94[EUR][1000 genomes]
rs4865866	0.94[EUR][1000 genomes]
rs4865867	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56046642	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6450239	0.93[EUR][1000 genomes]
rs6450243	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6876610	0.94[EUR][1000 genomes]
rs6877012	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6893796	0.85[ASN][1000 genomes]
rs6894873	0.94[EUR][1000 genomes]
rs7706028	0.94[EUR][1000 genomes]
rs977207	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs977208	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs977209	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54017000-54038000	Weak transcription	Aorta	Aorta
2	chr5:54026200-54031600	Weak transcription	Fetal Heart	heart

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