Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:54024735..54028634-chr5:54029831..54032905,3	K562	blood:
2	chr5:54017315..54018938-chr5:54030399..54032584,2	K562	blood:
3	chr5:53609481..53612376-chr5:54030629..54032657,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12516090	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12516335	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12516850	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12516870	0.84[AFR][1000 genomes]
rs1979009	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1979010	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1979011	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121132	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4348178	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4353983	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4353984	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4359998	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4485879	0.87[AFR][1000 genomes]
rs4588542	0.88[AFR][1000 genomes]
rs4604146	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4865867	0.86[AFR][1000 genomes]
rs973959	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs977207	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs977208	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs977209	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54017000-54038000	Weak transcription	Aorta	Aorta
2	chr5:54027400-54035800	Weak transcription	Primary B cells from cord blood	blood
3	chr5:54031600-54032400	Enhancers	NHDF-Ad	bronchial
4	chr5:54031600-54032600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:54031600-54032600	Enhancers	Fetal Heart	heart
6	chr5:54031600-54032600	Flanking Active TSS	K562	blood

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