Variant report

Variant	rs1979011
Chromosome Location	chr5:54031850-54031851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12516090	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12516335	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12516850	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1979009	0.85[EUR][1000 genomes]
rs1979010	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2121132	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4348178	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4353983	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4353984	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4359998	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4482860	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485879	0.81[AFR][1000 genomes]
rs4588542	0.83[AFR][1000 genomes]
rs4604146	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4865867	0.81[AFR][1000 genomes]
rs973959	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs977207	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs977208	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs977209	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54017000-54038000	Weak transcription	Aorta	Aorta
2	chr5:54027400-54035800	Weak transcription	Primary B cells from cord blood	blood
3	chr5:54031600-54032400	Enhancers	NHDF-Ad	bronchial
4	chr5:54031600-54032600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:54031600-54032600	Enhancers	Fetal Heart	heart
6	chr5:54031600-54032600	Flanking Active TSS	K562	blood
7	chr5:54031800-54032000	Enhancers	Right Ventricle	heart
8	chr5:54031800-54032600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:54031800-54032600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:54031800-54034200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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