Variant report

Variant	rs977209
Chromosome Location	chr5:54029142-54029143
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:54027207..54029848-chr5:54032087..54034780,2	K562	blood:
2	chr5:54022408..54025338-chr5:54027212..54029464,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12516090	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12516335	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12516850	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12516870	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12523476	0.86[AMR][1000 genomes]
rs1373990	0.83[EUR][1000 genomes]
rs1562232	0.82[EUR][1000 genomes]
rs1979010	0.80[AFR][1000 genomes]
rs1979011	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2121132	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3923240	0.83[EUR][1000 genomes]
rs4282276	0.82[EUR][1000 genomes]
rs4286627	0.81[EUR][1000 genomes]
rs4348178	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4353983	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4353984	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4359998	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4482860	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4485879	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4588542	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4604146	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4865867	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4865868	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56046642	0.82[AMR][1000 genomes]
rs6450240	0.82[EUR][1000 genomes]
rs6450242	0.82[EUR][1000 genomes]
rs6877012	0.84[AMR][1000 genomes]
rs6893796	0.82[EUR][1000 genomes]
rs7719575	0.82[EUR][1000 genomes]
rs7727742	0.82[EUR][1000 genomes]
rs9292068	0.81[EUR][1000 genomes]
rs977207	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs977208	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3382740	chr5:54028912-54029450	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54017000-54038000	Weak transcription	Aorta	Aorta
2	chr5:54026200-54031600	Weak transcription	Fetal Heart	heart
3	chr5:54027400-54035800	Weak transcription	Primary B cells from cord blood	blood
4	chr5:54029000-54029400	Enhancers	NHDF-Ad	bronchial

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