Variant report

Variant rs1562232
Chromosome Location chr5:54000287-54000288
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:35 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:53996800-54001600 Enhancers Fetal Heart heart
2 chr5:53998200-54000400 Enhancers Duodenum Smooth Muscle Duodenum
3 chr5:53998200-54001000 Enhancers Fetal Intestine Small intestine
4 chr5:53998200-54002200 Enhancers Fetal Lung lung
5 chr5:53998400-54000400 Enhancers Cortex derived primary cultured neurospheres brain
6 chr5:53998600-54000400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
7 chr5:53998800-54001400 Enhancers Fetal Stomach stomach
8 chr5:53999000-54000400 Enhancers HUES6 Cell Line embryonic stem cell
9 chr5:53999000-54000400 Enhancers Right Ventricle heart
10 chr5:53999000-54001000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr5:53999200-54001000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
12 chr5:53999600-54000400 Enhancers HSMM muscle
13 chr5:53999600-54000600 Enhancers NHLF lung
14 chr5:53999600-54001200 Weak transcription Primary monocytes fromperipheralblood blood
15 chr5:53999600-54001800 Weak transcription Monocytes-CD14+_RO01746 blood
16 chr5:53999600-54002200 Weak transcription Primary B cells from peripheral blood blood
17 chr5:53999600-54002600 Weak transcription Ovary ovary
18 chr5:53999600-54003600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr5:53999800-54000800 Enhancers HSMMtube muscle
20 chr5:53999800-54001200 Enhancers Adipose Nuclei Adipose
21 chr5:53999800-54001800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
22 chr5:53999800-54009400 Weak transcription Aorta Aorta
23 chr5:53999800-54009600 Weak transcription Right Atrium heart
24 chr5:54000000-54000400 Weak transcription Brain Substantia Nigra brain
25 chr5:54000000-54000600 Enhancers NHDF-Ad bronchial
26 chr5:54000000-54000800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr5:54000000-54001000 Weak transcription Psoas Muscle Psoas
28 chr5:54000000-54001400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr5:54000000-54001400 Enhancers Brain Hippocampus Middle brain
30 chr5:54000000-54002800 Weak transcription Fetal Intestine Large intestine
31 chr5:54000000-54005000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr5:54000000-54005000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr5:54000200-54000600 Weak transcription Brain Cingulate Gyrus brain
34 chr5:54000200-54000600 Weak transcription Placenta Placenta
35 chr5:54000200-54005600 Weak transcription Fetal Adrenal Gland Adrenal Gland

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