Variant report

Variant	rs4302535
Chromosome Location	chr5:54002700-54002701
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:54001087..54003577-chr5:54005143..54007201,4	K562	blood:
2	chr5:54001087..54003577-chr5:54005143..54007201,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12523476	0.92[EUR][1000 genomes]
rs12659365	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13164810	0.94[EUR][1000 genomes]
rs1373990	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1542165	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1562232	0.98[ASN][1000 genomes]
rs1823055	0.82[EUR][1000 genomes]
rs1867684	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35429219	0.89[EUR][1000 genomes]
rs4282276	0.94[ASN][1000 genomes]
rs4286627	0.84[ASN][1000 genomes]
rs4429808	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485879	0.94[EUR][1000 genomes]
rs4562000	0.82[EUR][1000 genomes]
rs4588542	0.94[EUR][1000 genomes]
rs4627947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865582	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865583	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865584	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865864	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865866	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865867	0.93[EUR][1000 genomes]
rs56046642	0.95[EUR][1000 genomes]
rs6450239	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6450240	0.95[ASN][1000 genomes]
rs6450242	0.94[ASN][1000 genomes]
rs6450243	0.93[EUR][1000 genomes]
rs6876610	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877012	0.91[EUR][1000 genomes]
rs6894873	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706028	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719575	0.94[ASN][1000 genomes]
rs7727742	0.94[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:53999600-54003600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:53999800-54009400	Weak transcription	Aorta	Aorta
3	chr5:53999800-54009600	Weak transcription	Right Atrium	heart
4	chr5:54000000-54002800	Weak transcription	Fetal Intestine Large	intestine
5	chr5:54000000-54005000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:54000000-54005000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:54000200-54005600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:54001200-54004000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:54001800-54003200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr5:54002400-54002800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:54002400-54003200	Enhancers	Fetal Heart	heart
12	chr5:54002600-54002800	Enhancers	Fetal Stomach	stomach
13	chr5:54002600-54003200	Enhancers	Placenta	Placenta
14	chr5:54002600-54003200	Enhancers	Ovary	ovary
15	chr5:54002600-54003600	Weak transcription	Adipose Nuclei	Adipose
16	chr5:54002600-54005000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:54002600-54009600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links