Variant report

Variant	rs1542165
Chromosome Location	chr5:53991207-53991208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:53989884..53992585-chr5:53999532..54002078,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12523476	0.92[EUR][1000 genomes]
rs12659365	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13164810	0.94[EUR][1000 genomes]
rs1373990	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1562232	0.96[ASN][1000 genomes]
rs1823055	0.82[EUR][1000 genomes]
rs1867684	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35429219	0.89[EUR][1000 genomes]
rs4242042	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs4282276	0.92[ASN][1000 genomes]
rs4286627	0.82[ASN][1000 genomes]
rs4302535	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4429808	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4485879	0.94[EUR][1000 genomes]
rs4562000	0.82[EUR][1000 genomes]
rs4588542	0.94[EUR][1000 genomes]
rs4627947	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865582	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865583	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865584	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865864	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865866	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865867	0.93[EUR][1000 genomes]
rs56046642	0.95[EUR][1000 genomes]
rs6450239	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6450240	0.93[ASN][1000 genomes]
rs6450242	0.92[ASN][1000 genomes]
rs6450243	0.93[EUR][1000 genomes]
rs6876610	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6877012	0.91[EUR][1000 genomes]
rs6894873	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7706028	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7719575	0.92[ASN][1000 genomes]
rs7727742	0.92[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:53986800-53992800	Weak transcription	HSMMtube	muscle
2	chr5:53987000-53992600	Weak transcription	Osteobl	bone
3	chr5:53987400-53999600	Weak transcription	Pancreas	Pancrea
4	chr5:53987600-53997800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:53988400-53995200	Enhancers	Fetal Lung	lung
6	chr5:53988600-53991600	Weak transcription	Adipose Nuclei	Adipose
7	chr5:53988600-53992200	Weak transcription	Right Atrium	heart
8	chr5:53989000-53992200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:53989200-53992000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:53989800-53993000	Enhancers	Brain Substantia Nigra	brain
11	chr5:53989800-53995000	Enhancers	Fetal Stomach	stomach
12	chr5:53990000-53991600	Weak transcription	Ovary	ovary
13	chr5:53990000-53992200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr5:53990000-53993200	Enhancers	Brain Cingulate Gyrus	brain
15	chr5:53990000-53999000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:53990200-53991600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:53990400-53991600	Weak transcription	Fetal Muscle Leg	muscle
18	chr5:53990400-53992200	Weak transcription	Colon Smooth Muscle	Colon
19	chr5:53990400-53992800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:53990600-53991400	Weak transcription	Aorta	Aorta
21	chr5:53990600-53991400	Weak transcription	Brain Anterior Caudate	brain
22	chr5:53990600-53991600	Weak transcription	Lung	lung
23	chr5:53990600-53992800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr5:53990600-53994000	Weak transcription	Fetal Heart	heart
25	chr5:53990600-53994800	Weak transcription	Left Ventricle	heart
26	chr5:53990600-53999000	Weak transcription	Right Ventricle	heart
27	chr5:53990800-53992000	Weak transcription	Fetal Brain Male	brain
28	chr5:53990800-53992000	Weak transcription	Fetal Brain Female	brain
29	chr5:53990800-53992000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr5:53990800-53992600	Enhancers	Brain Hippocampus Middle	brain
31	chr5:53990800-53992600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr5:53990800-53998800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr5:53991000-53991400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr5:53991000-53992000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr5:53991200-53991400	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr5:53991200-53992400	Weak transcription	Brain Germinal Matrix	brain
37	chr5:53991200-53995000	Weak transcription	NHLF	lung

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