Variant report

Variant	rs486861
Chromosome Location	chr4:152826290-152826291
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PET112-2	chr4:152826084-152826465	XLOC_004124
2	lnc-PET112-2	chr4:152826097-152826465	XLOC_004124
3	lnc-PET112-2	chr4:152826089-152826465	XLOC_004124

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13113197	0.82[ASN][1000 genomes]
rs165582	0.82[ASN][1000 genomes]
rs1682083	0.82[ASN][1000 genomes]
rs184867	0.92[ASN][1000 genomes]
rs2113977	0.81[EUR][1000 genomes]
rs244282	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs244402	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs244403	0.92[ASN][1000 genomes]
rs360920	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360921	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361132	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs361133	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361135	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361137	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361138	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361139	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361140	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361159	0.92[ASN][1000 genomes]
rs361160	0.92[ASN][1000 genomes]
rs361161	0.92[ASN][1000 genomes]
rs361162	0.82[ASN][1000 genomes]
rs361164	0.82[ASN][1000 genomes]
rs361165	0.82[ASN][1000 genomes]
rs361167	0.82[ASN][1000 genomes]
rs4391010	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs471230	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518055	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523646	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551375	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577900	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6815631	0.82[ASN][1000 genomes]
rs6829557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs692907	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv595731	chr4:152790580-152831309	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152825400-152827600	Enhancers	GM12878-XiMat	blood
2	chr4:152826000-152827800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr4:152826000-152828000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:152826200-152827200	Enhancers	Primary B cells from peripheral blood	blood
5	chr4:152826200-152827600	Enhancers	H9 Cell Line	embryonic stem cell

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