Variant report

Variant	rs360920
Chromosome Location	chr4:152830746-152830747
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs13113197	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1631928	0.86[EUR][1000 genomes]
rs165575	0.95[EUR][1000 genomes]
rs165582	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1682083	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs184867	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2113977	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs244282	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs244403	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs360919	0.95[EUR][1000 genomes]
rs360921	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360938	0.86[EUR][1000 genomes]
rs361110	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs361132	0.86[ASN][1000 genomes]
rs361133	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361134	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361135	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361137	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361138	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361139	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361140	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361159	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs361160	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs361161	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs361162	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs361164	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs361165	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs361167	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4391010	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs471230	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482406	0.89[EUR][1000 genomes]
rs486861	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497981	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs509848	0.86[EUR][1000 genomes]
rs518055	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518253	0.82[AFR][1000 genomes]
rs523646	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551375	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566091	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs577900	0.95[ASN][1000 genomes]
rs6815631	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6829557	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs692907	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv595731	chr4:152790580-152831309	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152827000-152831800	Weak transcription	Fetal Thymus	thymus
2	chr4:152827600-152833200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:152827600-152833200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:152827800-152833200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:152829200-152833000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:152829800-152833200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:152830200-152831000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:152830600-152832800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:152830600-152833200	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links