Variant report

Variant	rs361110
Chromosome Location	chr4:152841392-152841393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13113197	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1631928	1.00[CEU][hapmap];0.81[MKK][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs165575	0.91[EUR][1000 genomes]
rs165582	0.84[EUR][1000 genomes]
rs1682083	0.84[EUR][1000 genomes]
rs184867	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2113977	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs244403	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs360919	0.91[EUR][1000 genomes]
rs360920	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs360938	1.00[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs361133	0.83[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap]
rs361140	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs361159	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[LWK][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs361160	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[LWK][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs361161	0.85[EUR][1000 genomes]
rs361162	0.84[EUR][1000 genomes]
rs361164	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs361167	0.81[EUR][1000 genomes]
rs471230	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs482406	0.84[EUR][1000 genomes]
rs509848	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs518055	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs523646	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs551375	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs566091	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];0.81[YRI][hapmap];0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6815631	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs692907	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs361110	FGG	cis	cerebellum	SCAN
rs361110	TMEM154	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152836200-152851000	Weak transcription	Fetal Thymus	thymus
2	chr4:152839200-152843400	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links