Variant report

Variant	rs361140
Chromosome Location	chr4:152818923-152818924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152804097..152806378-chr4:152817285..152819187,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs13113197	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1631928	1.00[CEU][hapmap];0.88[YRI][hapmap];0.83[EUR][1000 genomes]
rs165575	0.93[EUR][1000 genomes]
rs165582	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1682083	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs184867	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2113977	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs244282	0.95[ASN][1000 genomes]
rs244403	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs360919	0.93[EUR][1000 genomes]
rs360920	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs360921	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs360938	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs361110	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs361132	0.90[ASN][1000 genomes]
rs361133	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361134	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361135	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361137	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361138	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361139	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361159	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs361160	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs361161	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs361162	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs361164	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs361165	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs361167	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4391010	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471230	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs482406	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs486861	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs497981	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs509848	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs518055	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs518253	0.83[AFR][1000 genomes]
rs523646	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs551375	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs566091	0.85[ASW][hapmap];1.00[CEU][hapmap];0.86[LWK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs577900	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815631	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6829557	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs692907	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv595731	chr4:152790580-152831309	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs361140	FGG	cis	parietal	SCAN
rs361140	FGG	cis	cerebellum	SCAN
rs361140	TMEM154	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152818000-152820200	Enhancers	Placenta	Placenta
2	chr4:152818400-152819200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:152818400-152819600	Weak transcription	Right Ventricle	heart

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