Variant report

Variant	rs360919
Chromosome Location	chr4:152832903-152832904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13113197	0.83[EUR][1000 genomes]
rs1631928	1.00[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs165575	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs165582	0.85[EUR][1000 genomes]
rs1682083	0.85[EUR][1000 genomes]
rs184867	0.87[EUR][1000 genomes]
rs189672	0.81[GIH][hapmap]
rs2113977	0.93[EUR][1000 genomes]
rs244403	0.87[EUR][1000 genomes]
rs360920	0.95[EUR][1000 genomes]
rs360938	1.00[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs361110	0.91[EUR][1000 genomes]
rs361133	0.83[CEU][hapmap]
rs361140	0.93[EUR][1000 genomes]
rs361159	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs361160	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs361161	0.85[EUR][1000 genomes]
rs361162	0.85[EUR][1000 genomes]
rs361164	0.85[EUR][1000 genomes]
rs361165	0.81[EUR][1000 genomes]
rs361167	0.84[EUR][1000 genomes]
rs471230	0.95[EUR][1000 genomes]
rs482406	0.85[EUR][1000 genomes]
rs509848	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs518055	0.95[EUR][1000 genomes]
rs523646	0.95[EUR][1000 genomes]
rs551375	0.95[EUR][1000 genomes]
rs566091	1.00[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6815631	0.85[EUR][1000 genomes]
rs692907	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs360919	FGG	cis	cerebellum	SCAN
rs360919	TMEM154	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152827600-152833200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:152827600-152833200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:152827800-152833200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:152829200-152833000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:152829800-152833200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:152830600-152833200	Weak transcription	GM12878-XiMat	blood
7	chr4:152831600-152838400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:152831800-152833600	Enhancers	Fetal Thymus	thymus
9	chr4:152832800-152834000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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