Variant report

Variant	rs361159
Chromosome Location	chr4:152805609-152805610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:152805506..152807725-chr4:152813069..152815634,2	K562	blood:
2	chr4:152804253..152807006-chr4:152811957..152814569,2	K562	blood:
3	chr4:152803737..152805745-chr4:152816897..152818541,2	MCF-7	breast:
4	chr4:152804097..152806378-chr4:152817285..152819187,2	K562	blood:

Variant related genes	Relation type
ENSG00000249708	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs13113197	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1631928	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs165575	0.87[EUR][1000 genomes]
rs165582	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1682083	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs184867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2113977	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs244282	0.92[ASN][1000 genomes]
rs244403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360919	0.87[EUR][1000 genomes]
rs360920	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs360921	0.92[ASN][1000 genomes]
rs360938	1.00[CEU][hapmap]
rs361110	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs361132	0.88[ASN][1000 genomes]
rs361133	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs361134	0.97[ASN][1000 genomes]
rs361135	0.97[ASN][1000 genomes]
rs361137	0.97[ASN][1000 genomes]
rs361138	0.97[ASN][1000 genomes]
rs361139	0.97[ASN][1000 genomes]
rs361140	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs361160	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361161	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs361162	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs361164	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs361165	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs361167	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4391010	0.97[ASN][1000 genomes]
rs471230	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs482406	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs486861	0.92[ASN][1000 genomes]
rs497981	0.92[ASN][1000 genomes]
rs509848	1.00[CEU][hapmap]
rs518055	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs518253	0.90[AFR][1000 genomes]
rs523646	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs551375	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs566091	1.00[CEU][hapmap];0.95[LWK][hapmap];0.91[MKK][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs577900	0.97[ASN][1000 genomes]
rs6815631	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6829557	0.92[ASN][1000 genomes]
rs692907	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2757086	chr4:152776271-152809738	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759289	chr4:152776271-152809738	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2753274	chr4:152789393-152805609	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv595731	chr4:152790580-152831309	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2754023	chr4:152791533-152805609	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv432650	chr4:152791533-152805609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv432652	chr4:152791533-152818018	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152796400-152808200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:152796600-152806800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:152796600-152807200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:152801800-152806600	Weak transcription	Fetal Brain Male	brain
5	chr4:152801800-152806800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:152801800-152807000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:152802200-152807000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:152802400-152806000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:152803400-152809200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:152804000-152808800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr4:152804000-152809000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:152804200-152806000	Enhancers	GM12878-XiMat	blood
13	chr4:152804200-152809400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:152804400-152806000	Enhancers	Thymus	Thymus
15	chr4:152805600-152808400	Weak transcription	Fetal Thymus	thymus

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