Variant report

Variant	rs4871387
Chromosome Location	chr8:124576314-124576315
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:124576084..124576694-chr8:124628788..124629698,2	MCF-7	breast:
2	chr8:124540511..124541133-chr8:124575940..124576732,2	MCF-7	breast:
3	chr8:124576156..124578603-chr8:124779718..124782286,3	MCF-7	breast:
4	chr8:124466204..124466710-chr8:124575524..124576463,2	MCF-7	breast:
5	chr8:124575822..124576635-chr8:125476420..125477334,2	MCF-7	breast:
6	chr8:124574966..124577834-chr8:124674515..124676204,2	MCF-7	breast:
7	chr8:124551947..124555089-chr8:124574852..124578718,4	MCF-7	breast:
8	chr8:124576290..124577996-chr8:124608283..124610311,3	MCF-7	breast:
9	chr8:124427734..124430376-chr8:124575604..124577355,2	MCF-7	breast:
10	chr8:124576148..124577838-chr8:124579328..124580948,2	MCF-7	breast:
11	chr8:124575903..124576989-chr8:124608630..124609392,4	MCF-7	breast:
12	chr8:124575271..124580118-chr8:124587417..124591995,7	MCF-7	breast:
13	chr8:124574833..124579835-chr8:124581420..124586695,7	MCF-7	breast:
14	chr8:124576148..124579059-chr8:124591482..124593021,2	MCF-7	breast:
15	chr8:124576105..124576872-chr8:124674065..124674855,3	MCF-7	breast:
16	chr8:124575550..124576439-chr8:124638158..124638909,2	MCF-7	breast:
17	chr8:124540299..124544028-chr8:124575261..124578367,3	MCF-7	breast:
18	chr8:124548751..124555755-chr8:124572914..124580106,12	MCF-7	breast:
19	chr8:124572458..124577349-chr8:124702422..124707183,6	MCF-7	breast:
20	chr8:124575939..124579271-chr8:124581722..124584580,4	MCF-7	breast:
21	chr8:124574004..124576603-chr8:124675208..124677787,2	MCF-7	breast:
22	chr8:124575528..124576396-chr8:124638141..124638658,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000156802	Chromatin interaction
ENSG00000176853	Chromatin interaction
ENSG00000156804	Chromatin interaction
ENSG00000156795	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17254013	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs4529453	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871384	1.00[JPT][hapmap]
rs4871385	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4871388	0.87[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4871389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62518431	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62518436	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520864	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520865	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62520872	0.90[EUR][1000 genomes]
rs7821824	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124578200	Enhancers	Placenta	Placenta
2	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:124575800-124577000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:124576000-124577000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:124576000-124577000	Enhancers	HMEC	breast
6	chr8:124576200-124576400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:124576200-124577000	Enhancers	NHEK	skin
8	chr8:124576200-124578400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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