Variant report

Variant	rs62520865
Chromosome Location	chr8:124584982-124584983
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17254013	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4529453	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4871387	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4871389	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62518431	0.91[EUR][1000 genomes]
rs62518436	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62520861	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62520864	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62520866	0.83[ASN][1000 genomes]
rs62520872	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124581400-124585000	Weak transcription	Adipose Nuclei	Adipose
3	chr8:124581600-124586400	Weak transcription	Fetal Heart	heart
4	chr8:124582400-124585800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:124582600-124588400	Enhancers	Fetal Muscle Leg	muscle
6	chr8:124582600-124588400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr8:124583200-124588000	Enhancers	Psoas Muscle	Psoas
8	chr8:124583400-124586400	Weak transcription	HSMMtube	muscle
9	chr8:124584600-124587400	Enhancers	Placenta	Placenta
10	chr8:124584800-124585200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr8:124584800-124585600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr8:124584800-124585800	Enhancers	Esophagus	oesophagus
13	chr8:124584800-124586800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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