Variant report

Variant	rs62520864
Chromosome Location	chr8:124582808-124582809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17254013	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4529453	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871387	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871388	1.00[ASN][1000 genomes]
rs4871389	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62518431	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62518436	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520861	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520865	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62520872	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62521293	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124581400-124583200	Weak transcription	Right Atrium	heart
3	chr8:124581400-124583200	Weak transcription	HSMMtube	muscle
4	chr8:124581400-124584600	Weak transcription	Placenta	Placenta
5	chr8:124581400-124584800	Weak transcription	Esophagus	oesophagus
6	chr8:124581400-124585000	Weak transcription	Adipose Nuclei	Adipose
7	chr8:124581600-124586400	Weak transcription	Fetal Heart	heart
8	chr8:124582400-124583200	Weak transcription	Psoas Muscle	Psoas
9	chr8:124582400-124585800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:124582600-124583200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr8:124582600-124588400	Enhancers	Fetal Muscle Leg	muscle
12	chr8:124582600-124588400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr8:124582800-124584800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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