Variant report

Variant	rs62518436
Chromosome Location	chr8:124573599-124573600
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17254013	0.90[EUR][1000 genomes]
rs4529453	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871387	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871388	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4871389	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62518431	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62520861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520864	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520865	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62520872	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124571000-124575400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:124572800-124575600	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links