Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11718583	0.80[EUR][1000 genomes]
rs1965072	0.90[ASN][1000 genomes]
rs1965073	0.89[ASN][1000 genomes]
rs492885	0.92[ASN][1000 genomes]
rs510605	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs525736	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs529098	0.86[ASN][1000 genomes]
rs530868	0.89[ASN][1000 genomes]
rs533524	0.90[ASN][1000 genomes]
rs535526	0.88[ASN][1000 genomes]
rs543828	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs550728	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs562668	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs566884	0.85[ASN][1000 genomes]
rs568051	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs588784	0.94[ASN][1000 genomes]
rs593629	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs596992	0.85[ASN][1000 genomes]
rs599573	0.94[ASN][1000 genomes]
rs601383	0.94[ASN][1000 genomes]
rs601420	0.94[ASN][1000 genomes]
rs608142	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs622326	0.88[ASN][1000 genomes]
rs623696	0.86[ASN][1000 genomes]
rs630987	0.89[ASN][1000 genomes]
rs634393	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs646220	0.89[ASN][1000 genomes]
rs652364	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs666071	0.94[ASN][1000 genomes]
rs7633762	0.84[AMR][1000 genomes]
rs838017	0.90[ASN][1000 genomes]
rs9836012	0.86[AMR][1000 genomes]
rs9882650	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834700	chr3:54637374-54803896	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54705000-54719000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:54705600-54718800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:54706000-54721600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:54706200-54718400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:54706200-54719400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:54709400-54718600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:54713600-54718800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:54713600-54743400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:54716000-54724800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:54717600-54725200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:54717800-54718200	Weak transcription	H9 Cell Line	embryonic stem cell

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