Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11718583	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1965072	0.82[ASN][1000 genomes]
rs1965073	0.81[ASN][1000 genomes]
rs488451	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs492885	0.84[ASN][1000 genomes]
rs510605	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs525736	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs530868	0.82[ASN][1000 genomes]
rs533524	0.83[ASN][1000 genomes]
rs535526	0.81[ASN][1000 genomes]
rs543828	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs550728	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs562668	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs566884	0.92[ASN][1000 genomes]
rs568051	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs588784	0.86[ASN][1000 genomes]
rs599573	0.86[ASN][1000 genomes]
rs601383	0.86[ASN][1000 genomes]
rs601420	0.86[ASN][1000 genomes]
rs608142	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs622326	0.82[ASN][1000 genomes]
rs630987	0.82[ASN][1000 genomes]
rs634393	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs646220	0.97[ASN][1000 genomes]
rs652364	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs666071	0.86[ASN][1000 genomes]
rs838017	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834700	chr3:54637374-54803896	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54713600-54743400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:54732400-54737600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:54732400-54737800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:54732400-54737800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:54732400-54737800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:54732800-54737000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:54732800-54737600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:54732800-54737600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:54733000-54737600	Weak transcription	Brain Anterior Caudate	brain
10	chr3:54733200-54737400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:54733400-54737600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:54733600-54737200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:54733600-54737400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:54733600-54737800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:54733800-54737600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:54734000-54738000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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