Variant report

Variant	rs4890326
Chromosome Location	chr18:44007352-44007353
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43935158..43937800-chr18:44005319..44007671,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12604983	0.83[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12607113	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34229367	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35178576	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3861807	0.83[CEU][hapmap];0.90[MEX][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3861808	0.83[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3911129	0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4890649	0.83[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4890650	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4890651	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7235217	0.83[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.81[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4890326	RNF165	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43994200-44011600	Weak transcription	Fetal Brain Female	brain
2	chr18:43994800-44015400	Weak transcription	Fetal Brain Male	brain
3	chr18:43995800-44011600	Weak transcription	Thymus	Thymus
4	chr18:43999000-44011600	Weak transcription	Fetal Lung	lung
5	chr18:43999400-44013000	Weak transcription	Brain Germinal Matrix	brain
6	chr18:43999800-44030200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr18:44000200-44014600	Weak transcription	Right Atrium	heart
8	chr18:44001000-44007800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr18:44003600-44008400	Weak transcription	Liver	Liver
10	chr18:44003600-44018600	Weak transcription	Spleen	Spleen
11	chr18:44004000-44007600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr18:44004800-44011600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr18:44005000-44007400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr18:44005200-44009800	Weak transcription	Fetal Muscle Leg	muscle
15	chr18:44005200-44011600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr18:44005400-44009800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr18:44005400-44011600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr18:44005400-44013000	Weak transcription	Right Ventricle	heart
19	chr18:44005600-44008400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr18:44005600-44011400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr18:44005800-44008800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr18:44005800-44011400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr18:44005800-44011400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr18:44005800-44013400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr18:44006000-44013200	Weak transcription	Fetal Stomach	stomach
26	chr18:44007000-44007600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr18:44007200-44013200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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