Variant report

Variant	rs4890649
Chromosome Location	chr18:43983955-43983956
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43981917..43984385-chr18:43994291..43996366,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12604983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12607113	0.85[EUR][1000 genomes]
rs34229367	0.85[EUR][1000 genomes]
rs34543105	0.82[AFR][1000 genomes]
rs35178576	0.85[EUR][1000 genomes]
rs36071668	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3861807	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs3861808	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs3911129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs4890326	0.83[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4890650	0.85[EUR][1000 genomes]
rs4890651	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs7235217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9962451	0.80[CEU][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43969200-43985200	Weak transcription	Right Atrium	heart
2	chr18:43973600-43991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:43974200-43990400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:43978600-43985200	Weak transcription	Esophagus	oesophagus
5	chr18:43978800-43986200	Weak transcription	Fetal Stomach	stomach
6	chr18:43979800-43986200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:43980200-43985400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr18:43980600-43985200	Weak transcription	Left Ventricle	heart
9	chr18:43980600-43985200	Weak transcription	Right Ventricle	heart
10	chr18:43980800-43985000	Weak transcription	Fetal Heart	heart
11	chr18:43981200-43987800	Weak transcription	GM12878-XiMat	blood
12	chr18:43981800-43990200	Weak transcription	Lung	lung
13	chr18:43981800-43991800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr18:43982000-43986600	Weak transcription	Colon Smooth Muscle	Colon
15	chr18:43983000-43985200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr18:43983000-43989600	Weak transcription	Fetal Lung	lung
17	chr18:43983200-43985200	Weak transcription	Fetal Muscle Leg	muscle
18	chr18:43983200-43985200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr18:43983200-43988200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr18:43983200-43991200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr18:43983400-43985200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr18:43983400-43985200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr18:43983400-43985200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr18:43983400-43985400	Weak transcription	Psoas Muscle	Psoas
25	chr18:43983600-43985000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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