Variant report

Variant	rs9962451
Chromosome Location	chr18:43979699-43979700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43978606..43980174-chr18:43980566..43982099,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12606026	0.87[CEU][hapmap]
rs12607419	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12607460	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12607488	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12607970	0.88[CEU][hapmap]
rs12608433	0.93[CEU][hapmap]
rs12956271	0.94[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs12965332	0.88[CEU][hapmap]
rs12968635	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs16978558	0.88[CEU][hapmap]
rs16978559	0.88[CEU][hapmap]
rs2053957	0.93[ASN][1000 genomes]
rs2886344	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34223668	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34543105	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35308870	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35897092	0.87[EUR][1000 genomes]
rs3861808	0.80[CEU][hapmap]
rs3889942	0.94[CEU][hapmap]
rs4890649	0.80[CEU][hapmap]
rs4890651	0.80[CEU][hapmap]
rs56126321	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56267717	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60703536	0.96[ASN][1000 genomes]
rs71364535	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71364536	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7229614	0.83[CEU][hapmap]
rs7235217	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7236110	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs8085058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9635947	0.87[EUR][1000 genomes]
rs9949033	0.94[CEU][hapmap]
rs9949861	0.94[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3326438	chr18:43974654-43980152	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3405384	chr18:43975654-43980052	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43964400-43980800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr18:43967800-43981000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:43968000-43980000	Weak transcription	Brain Germinal Matrix	brain
4	chr18:43968800-43981400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr18:43969200-43985200	Weak transcription	Right Atrium	heart
6	chr18:43973600-43991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:43974200-43990400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr18:43974600-43980000	Weak transcription	Left Ventricle	heart
9	chr18:43975200-43983400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr18:43976400-43980000	Weak transcription	Fetal Brain Female	brain
11	chr18:43976600-43981000	Enhancers	Fetal Muscle Trunk	muscle
12	chr18:43977000-43983200	Enhancers	Fetal Muscle Leg	muscle
13	chr18:43977200-43983000	Weak transcription	Psoas Muscle	Psoas
14	chr18:43978000-43980600	Enhancers	Right Ventricle	heart
15	chr18:43978200-43981000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr18:43978200-43982800	Weak transcription	Fetal Lung	lung
17	chr18:43978400-43980000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr18:43978400-43980200	Enhancers	Spleen	Spleen
19	chr18:43978400-43981000	Weak transcription	Lung	lung
20	chr18:43978400-43982800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr18:43978600-43985200	Weak transcription	Esophagus	oesophagus
22	chr18:43978800-43979800	Weak transcription	GM12878-XiMat	blood
23	chr18:43978800-43982600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr18:43978800-43982800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr18:43978800-43986200	Weak transcription	Fetal Stomach	stomach
26	chr18:43979000-43979800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr18:43979200-43980400	Enhancers	Fetal Brain Male	brain
28	chr18:43979400-43980000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr18:43979600-43980800	Enhancers	Fetal Heart	heart
30	chr18:43979600-43981400	Enhancers	Fetal Thymus	thymus

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