Variant report

Variant	rs3889942
Chromosome Location	chr18:44006403-44006404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43935158..43937800-chr18:44005319..44007671,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12606026	0.93[CEU][hapmap];0.88[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12607419	0.94[CEU][hapmap]
rs12607488	0.94[CEU][hapmap]
rs12607970	0.93[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs12608433	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs12956271	0.88[CEU][hapmap]
rs12956369	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12957205	0.86[AFR][1000 genomes]
rs12963221	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12965332	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs16978558	0.93[CEU][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16978559	0.93[CEU][hapmap];0.83[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2886344	0.93[CEU][hapmap]
rs34046291	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34139708	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34271155	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34311565	0.84[EUR][1000 genomes]
rs34472213	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34656919	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34960770	0.83[EUR][1000 genomes]
rs35025356	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35044751	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35939778	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36020946	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3850527	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57027858	0.84[EUR][1000 genomes]
rs58223751	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58843633	0.84[EUR][1000 genomes]
rs7236110	0.88[CEU][hapmap]
rs9949033	1.00[CEU][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9949861	0.87[CEU][hapmap]
rs9962451	0.94[CEU][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43994200-44011600	Weak transcription	Fetal Brain Female	brain
2	chr18:43994800-44015400	Weak transcription	Fetal Brain Male	brain
3	chr18:43995800-44011600	Weak transcription	Thymus	Thymus
4	chr18:43999000-44011600	Weak transcription	Fetal Lung	lung
5	chr18:43999400-44013000	Weak transcription	Brain Germinal Matrix	brain
6	chr18:43999800-44030200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr18:44000200-44014600	Weak transcription	Right Atrium	heart
8	chr18:44001000-44007800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr18:44003600-44008400	Weak transcription	Liver	Liver
10	chr18:44003600-44018600	Weak transcription	Spleen	Spleen
11	chr18:44004000-44007600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr18:44004800-44011600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr18:44005000-44007200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr18:44005000-44007400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr18:44005200-44006600	Enhancers	Primary hematopoietic stem cells	blood
16	chr18:44005200-44009800	Weak transcription	Fetal Muscle Leg	muscle
17	chr18:44005200-44011600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr18:44005400-44009800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr18:44005400-44011600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr18:44005400-44013000	Weak transcription	Right Ventricle	heart
21	chr18:44005600-44006600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr18:44005600-44008400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr18:44005600-44011400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr18:44005800-44007000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr18:44005800-44008800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr18:44005800-44011400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr18:44005800-44011400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr18:44005800-44013400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr18:44006000-44013200	Weak transcription	Fetal Stomach	stomach
30	chr18:44006400-44006600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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