Variant report

Variant	rs35025356
Chromosome Location	chr18:43980895-43980896
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43978606..43980174-chr18:43980566..43982099,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12606026	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12607371	0.80[EUR][1000 genomes]
rs12607970	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12608433	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12956369	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12963221	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12965332	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16978558	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16978559	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34026934	0.80[EUR][1000 genomes]
rs34046291	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34139708	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34271155	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34311565	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34472213	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34656919	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34960770	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35044751	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35897092	0.83[ASN][1000 genomes]
rs35927866	0.85[AFR][1000 genomes]
rs35939778	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36020946	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3889942	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57027858	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58223751	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58843633	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9635947	0.87[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43967800-43981000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:43968800-43981400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr18:43969200-43985200	Weak transcription	Right Atrium	heart
4	chr18:43973600-43991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:43974200-43990400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr18:43975200-43983400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr18:43976600-43981000	Enhancers	Fetal Muscle Trunk	muscle
8	chr18:43977000-43983200	Enhancers	Fetal Muscle Leg	muscle
9	chr18:43977200-43983000	Weak transcription	Psoas Muscle	Psoas
10	chr18:43978200-43981000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr18:43978200-43982800	Weak transcription	Fetal Lung	lung
12	chr18:43978400-43981000	Weak transcription	Lung	lung
13	chr18:43978400-43982800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr18:43978600-43985200	Weak transcription	Esophagus	oesophagus
15	chr18:43978800-43982600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr18:43978800-43982800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr18:43978800-43986200	Weak transcription	Fetal Stomach	stomach
18	chr18:43979600-43981400	Enhancers	Fetal Thymus	thymus
19	chr18:43979800-43981200	Enhancers	GM12878-XiMat	blood
20	chr18:43979800-43986200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr18:43980000-43981200	Enhancers	Fetal Brain Female	brain
22	chr18:43980200-43985400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr18:43980600-43985200	Weak transcription	Left Ventricle	heart
24	chr18:43980600-43985200	Weak transcription	Right Ventricle	heart
25	chr18:43980800-43982600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr18:43980800-43985000	Weak transcription	Fetal Heart	heart

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