Variant report

Variant	rs12606026
Chromosome Location	chr18:43989855-43989856
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12607419	0.87[CEU][hapmap]
rs12607488	0.86[CEU][hapmap]
rs12607970	1.00[CEU][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12608433	0.92[CEU][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12956271	0.93[CEU][hapmap]
rs12956369	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12963221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12965332	1.00[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16978558	1.00[CEU][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16978559	1.00[CEU][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2886344	0.93[CEU][hapmap]
rs34046291	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34139708	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34271155	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34311565	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34472213	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34656919	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34960770	0.87[EUR][1000 genomes]
rs35025356	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35044751	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35897092	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35939778	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36020946	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3850527	0.82[EUR][1000 genomes]
rs3889942	0.93[CEU][hapmap];0.88[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57027858	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58223751	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58843633	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7236110	0.93[CEU][hapmap]
rs9635947	0.90[ASN][1000 genomes]
rs9949033	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs9949861	0.93[CEU][hapmap]
rs9962451	0.87[CEU][hapmap]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43973600-43991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:43974200-43990400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:43981800-43990200	Weak transcription	Lung	lung
4	chr18:43981800-43991800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:43983200-43991200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr18:43985000-43995200	Enhancers	Fetal Heart	heart
7	chr18:43985200-43997000	Enhancers	Fetal Muscle Leg	muscle
8	chr18:43985200-43997400	Enhancers	Left Ventricle	heart
9	chr18:43985200-43997800	Enhancers	Right Ventricle	heart
10	chr18:43985200-44000600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr18:43985800-43991800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr18:43986800-43990200	Weak transcription	Spleen	Spleen
13	chr18:43986800-43991800	Weak transcription	Brain Angular Gyrus	brain
14	chr18:43987400-43990800	Weak transcription	Brain Anterior Caudate	brain
15	chr18:43987400-43991800	Weak transcription	Ovary	ovary
16	chr18:43987800-43992000	Enhancers	Stomach Smooth Muscle	stomach
17	chr18:43988200-43990200	Weak transcription	Colon Smooth Muscle	Colon
18	chr18:43988200-43991000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr18:43988200-43991000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr18:43988200-43991200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr18:43988400-43990000	Weak transcription	Psoas Muscle	Psoas
22	chr18:43988400-43992400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr18:43988600-43990800	Weak transcription	Fetal Stomach	stomach
24	chr18:43988600-43991000	Weak transcription	Esophagus	oesophagus
25	chr18:43988600-43991600	Weak transcription	Placenta	Placenta
26	chr18:43988600-43992000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr18:43988600-43992200	Weak transcription	Aorta	Aorta
28	chr18:43988800-43996400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr18:43989200-43991000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr18:43989400-43990600	Enhancers	Fetal Brain Male	brain
31	chr18:43989400-43994600	Weak transcription	K562	blood
32	chr18:43989400-43994800	Enhancers	Fetal Muscle Trunk	muscle
33	chr18:43989600-43990400	Enhancers	Fetal Lung	lung
34	chr18:43989600-43990800	Enhancers	Brain Germinal Matrix	brain
35	chr18:43989600-43993400	Enhancers	Right Atrium	heart
36	chr18:43989800-43991200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr18:43989800-43992200	Weak transcription	Fetal Brain Female	brain
38	chr18:43989800-43999000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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